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rs248258218 SNP Detail
Summary
  • ID
    rs248258218
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr2:126776734 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GCCAAGCTTA AAAACCTTTC
    ATTATTTAGT GTTTCAGAGT GCTGGCCTGG ACCACGGCTC CTGACTGCAG TTTCAGCATC
    ACCATCCAAA CCTATTGAAT CCGAGAATCA GAGAATGAGC ATTCCAGAGA CCTCATACTG
    CTACCTCAGT TTAGCTCAAA TAAATCTTAC TCCTGACCTT CTAAGTTGTC TCAGGGGAAC
    M
    TTTATACTCT TAAGAGCTTC TTGTTGGATG AGAATTCCTA AAATAGGACA CGAAAAAAGG
    AAAAACTATA CAACAATAAA ATCAAATTCA CTTCACCAAA ATAAAAACCT CTGTTCTTTG
    GAAGATATGT TTTTTAAATA TTTATTTGTG TGTGTACTTT CATAGACACC TACATGAGCT
    TATGTCTACT ATGTGTGTGC                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss355583219 MGP_WTSI_2_126760550 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248258218 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A C A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss355583219 MGP_WTSI_2_126760550 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:126776734 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12210 CpG island 12210 1410 bp distal
Gm75308 predicted gene, 75308 within coordinates
Rr564422 regulatory region 564422 1727 bp distal
Rr564423 regulatory region 564423 1738 bp distal
Rr564424 regulatory region 564424 1590 bp distal
Rr564425 regulatory region 564425 1089 bp distal
Sppl2a signal peptide peptidase like 2A 1579 bp upstream
Tssr26085 transcription start site region 26085 1724 bp upstream
Tssr26086 transcription start site region 26086 1681 bp upstream
Tssr26087 transcription start site region 26087 1650 bp upstream
Tssr26088 transcription start site region 26088 1587 bp upstream
Tssr26089 transcription start site region 26089 1573 bp upstream
Tssr26090 transcription start site region 26090 934 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory