rs248259839 SNP Detail

Summary

• ID
  rs248259839
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:22712713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAGCCTCA GAATAGAAAG
  GCGGCAAACA GGAGATAGGA CTCTCTGTGC ATCCAGGACC CAGGAAGGTA GAAGATAAAG
  AGCCAAGGGA GGAGCAAGAG AAACCTTTAA GGACACAAAC ACTCAAAGAA AGGGAGAAAA
  GTGGGCAACT AGAGAGAAGA AAGAATGAAG CAGAATGAAA GATAGCAAAG ATAATAAACC
  K
  TTCAAGATAA AAGCTAGCCC TCAGAGTCAC TTCTTTGTAA AGAGAGCTCA GAATAAGGAC
  TATGGCTGGG ACAGCTGTTC GAGCACCGCC CCCCCTCCCC TCCCCTCTTC CCCCTCCCCC
  CTCCCCATTT CACACCCGCT CCATCTATAG TGGAAGACTA AAAAGCCAAA ACAAAACAAA
  AAGAAAAAAA AAAAAAACCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395628330	MGP_WTSI_16_22894036	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248259839					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395628330	MGP_WTSI_16_22894036	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:22712713 () rs orientation: forward

Symbol	Name	Function Class
Ahsg	alpha-2-HS-glycoprotein	within coordinates
Gm30505	predicted gene, 30505	within coordinates
Tssr4818	transcription start site region 4818	1139 bp downstream
Tssr4819	transcription start site region 4819	1368 bp upstream
Tssr4820	transcription start site region 4820	1984 bp upstream
Tssr137557	transcription start site region 137557	1912 bp downstream
Tssr137558	transcription start site region 137558	1382 bp downstream
Tssr137559	transcription start site region 137559	1186 bp downstream
Tssr137560	transcription start site region 137560	1143 bp downstream
Tssr137561	transcription start site region 137561	1118 bp downstream
Tssr137562	transcription start site region 137562	792 bp downstream
Tssr137563	transcription start site region 137563	266 bp upstream
Tssr137564	transcription start site region 137564	285 bp upstream
Tssr137565	transcription start site region 137565	350 bp upstream
Tssr137566	transcription start site region 137566	449 bp upstream
Tssr137567	transcription start site region 137567	814 bp upstream
Tssr137568	transcription start site region 137568	833 bp upstream
Tssr137569	transcription start site region 137569	864 bp upstream
Tssr137570	transcription start site region 137570	879 bp upstream
Tssr137571	transcription start site region 137571	1213 bp upstream
Tssr137572	transcription start site region 137572	1236 bp upstream
Tssr137573	transcription start site region 137573	1330 bp upstream
Tssr137574	transcription start site region 137574	1351 bp upstream
Tssr137575	transcription start site region 137575	1357 bp upstream
Tssr140501	transcription start site region 140501	1814 bp upstream
Tssr140502	transcription start site region 140502	1668 bp upstream
Tssr140503	transcription start site region 140503	1630 bp upstream
Tssr140504	transcription start site region 140504	387 bp downstream
Tssr140505	transcription start site region 140505	460 bp downstream
Tssr140506	transcription start site region 140506	867 bp downstream
Tssr140507	transcription start site region 140507	1250 bp downstream
Tssr140508	transcription start site region 140508	1294 bp downstream
Tssr140509	transcription start site region 140509	1313 bp downstream
Tssr140510	transcription start site region 140510	1328 bp downstream
Tssr140511	transcription start site region 140511	1371 bp downstream