rs248265127 SNP Detail

Summary

• ID
  rs248265127
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115219422 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTACATTA GCTGTAAGAA
  CGAATAAAGC ACTACATTTG CATGAAATAC TTTAAAAACA AACATCAGAG GGATTTTGAA
  AGTGGCAGCT TTTAGTTAGG GGATGCACGT AGTAACAGTG AGGTAGGAAA AAGAGCAAAG
  ATATTTCTAA GATCACAAGG TATAATGGTA CAGCATATAA AATCAGAACT GTTTTCAGTT
  W
  AGTTTTCAGT ATTTCTTTTC TTCAGGCAGT TGGCAGTTCT AGAAGGAAAG GTGACCATTT
  ACTGAGTGCC GCCTATTATA TTCAAGTCGG TGTTCACATG CTTTGGAGTT TGACTTAACA
  GAATTAAAGA CATGACTGTA CGTTCAACCT GTGTGTGAGT GCGTGATTCT GTTCAAGAGA
  GAGTTTCTAT TTGCTCTTTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323484712	CHEV_10_114820573	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248265127					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115219422 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	518 bp proximal
Rr402239	regulatory region 402239	1211 bp upstream
Rr439213	regulatory region 439213	within coordinates
Rr439214	regulatory region 439214	776 bp proximal
Rr439215	regulatory region 439215	883 bp proximal
Rr439216	regulatory region 439216	1442 bp proximal
Rr439217	regulatory region 439217	1705 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	within coordinates
Tssr95813	transcription start site region 95813	400 bp upstream
Tssr95814	transcription start site region 95814	1404 bp upstream
Tssr95815	transcription start site region 95815	1434 bp upstream
Tssr95816	transcription start site region 95816	1528 bp upstream
Tssr99330	transcription start site region 99330	809 bp downstream
Tssr99331	transcription start site region 99331	820 bp downstream
Tssr99332	transcription start site region 99332	871 bp downstream
Tssr99333	transcription start site region 99333	959 bp downstream
Tssr99334	transcription start site region 99334	999 bp downstream
Tssr99335	transcription start site region 99335	1234 bp downstream
Zfc3h1	zinc finger, C3H1-type containing	1442 bp upstream