rs248270006 SNP Detail

Summary

• ID
  rs248270006
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:34722545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACTAAGGCA AATTAGATGA
  GAAACTGGAA ACTGCAGGTC ACTGGCCCAA GGTGGAGAAG TGAGGCAAAA GCCTGGTTAG
  GATAGGTTTG AGAGCCAGGC AGTGGTGGTG CACGCCTTTA ATCCCAGCAC TTGGGAGGCA
  GAGGCAGGTG GATTTCTGAG TTCAAGGCCA GCCTGGTCTA CAGAGTGAGT TCCAGGACAG
  M
  CAGGACTACA CAGAGAAACC CTGTCTCAGA AAATCAAAAC AAAACAAAAC AAAATAGGAT
  AGGTTTGAGA GAAAATAGTA GGCGATACAC AGATGTGGCT AAATGACATA AAAATCAAAG
  TGGAGCTCCA AAGCCTAGTG TGCTAATCAC TTTTCACCAC AACTTCTCAA AAACCCAACC
  CGTATAAGGC ATTTAAGTGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382963742	MGP_WTSI_11_34645220	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A	C	A	C	C	C	C	A	C	C	C	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248270006					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A	A	A	A	A	A	A	C	A	C	A	C	C	C	C	A	C	C	C	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382963742	MGP_WTSI_11_34645220	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:34722545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2724	CpG island 2724	1496 bp proximal
Gm57348	predicted gene, 57348	1964 bp upstream
Rr402479	regulatory region 402479	1787 bp upstream
Rr444978	regulatory region 444978	1188 bp proximal
Rr444979	regulatory region 444979	1913 bp proximal
Rr444980	regulatory region 444980	1997 bp proximal
Spdl1	spindle apparatus coiled-coil protein 1	Intron
Tssr107398	transcription start site region 107398	1866 bp downstream
Tssr107399	transcription start site region 107399	1885 bp downstream
Tssr107400	transcription start site region 107400	1913 bp downstream