rs248270395 SNP Detail

Summary

• ID
  rs248270395
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:91760102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCCCC TCAGTCCATC TTTCCCCATC
  Y
  TCCCACCTCC GACAGAGCTC CATGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320392920	CHEV_2_91769914	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248270395					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:91760102 () rs orientation: forward

Symbol	Name	Function Class
Chrm4	cholinergic receptor, muscarinic 4	1069 bp downstream
Cpgi11915	CpG island 11915	994 bp distal
Cpgi11916	CpG island 11916	1297 bp proximal
Gm39876	predicted gene, 39876	1793 bp upstream
Gm75422	predicted gene, 75422	within coordinates
Mdk	midkine	47 bp downstream
Rr560806	regulatory region 560806	1723 bp distal
Rr560807	regulatory region 560807	1328 bp distal
Rr560808	regulatory region 560808	353 bp distal
Rr560809	regulatory region 560809	449 bp proximal
Rr560810	regulatory region 560810	1921 bp proximal
Tssr18929	transcription start site region 18929	81 bp downstream
Tssr25211	transcription start site region 25211	111 bp downstream
Tssr25212	transcription start site region 25212	135 bp downstream
Tssr25213	transcription start site region 25213	1162 bp downstream
Tssr25214	transcription start site region 25214	1694 bp downstream
Tssr25215	transcription start site region 25215	1904 bp downstream
Tssr25216	transcription start site region 25216	1918 bp downstream
Tssr25217	transcription start site region 25217	1939 bp downstream
Tssr25218	transcription start site region 25218	1971 bp downstream