rs248275209 SNP Detail

Summary

• ID
  rs248275209
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140428743 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAACAAGAG AATCTGACAC
  TCTCCCGAGC CCCGAAGACG CCTTGTGACG CGCAGGCCGC GCTGCGTGCA AGGGCGTGCG
  GAGCGCGCAA GCGGCGGGGC CCAGCGGGGC CTGCGGCGTG GCGCCGGGCG TCCGGGACGC
  AGGCTCGGGT GGGCGGCCCG GCTGGGCGGT GGGGTCCTCC GGCCGGTAGG GGGCGCGCGC
  R
  CCCGGGGCCC CTCGCCGCCC GCCGCGCGCG CGCTCGCTTG CCGCCCGGCC GCACATGTGT
  TTCTGTTTTG TGTTGTAGCA TTTGTTCTGG AAGCTCGTAT TTACATTTTA AGTGTATCTG
  GTGAGTGGGC TGGAGCCCTC GTCCCGGCCG GGGAGAGAAG AAGCCTTCGA CCCCGTCTTT
  CAGTCGCTTC CCTCCTCGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363501328	MGP_WTSI_4_140257347	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248275209					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363501328	MGP_WTSI_4_140257347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140428743 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15194	CpG island 15194	1453 bp distal
Cpgi15195	CpG island 15195	within coordinates
Gm69527	predicted gene, 69527	162 bp upstream
Gm69529	predicted gene, 69529	962 bp downstream
Rcc2	regulator of chromosome condensation 2	within coordinates
Rr377298	regulatory region 377298	within coordinates
Rr603517	regulatory region 603517	1549 bp distal
Rr603518	regulatory region 603518	881 bp distal
Rr603519	regulatory region 603519	173 bp distal
Rr603520	regulatory region 603520	within coordinates
Rr603521	regulatory region 603521	1 bp distal
Tssr39970	transcription start site region 39970	1550 bp downstream
Tssr39971	transcription start site region 39971	1477 bp downstream
Tssr39972	transcription start site region 39972	1457 bp downstream
Tssr39973	transcription start site region 39973	1434 bp downstream
Tssr39974	transcription start site region 39974	1086 bp downstream
Tssr39975	transcription start site region 39975	947 bp downstream
Tssr39976	transcription start site region 39976	903 bp downstream
Tssr39977	transcription start site region 39977	819 bp downstream
Tssr39978	transcription start site region 39978	within coordinates
Tssr39979	transcription start site region 39979	15 bp upstream
Tssr39980	transcription start site region 39980	34 bp upstream
Tssr39981	transcription start site region 39981	78 bp upstream
Tssr39982	transcription start site region 39982	90 bp upstream
Tssr39983	transcription start site region 39983	176 bp upstream
Tssr39984	transcription start site region 39984	401 bp upstream
Tssr39985	transcription start site region 39985	463 bp upstream
Tssr39986	transcription start site region 39986	504 bp upstream
Tssr39987	transcription start site region 39987	649 bp upstream
Tssr39988	transcription start site region 39988	745 bp upstream
Tssr39989	transcription start site region 39989	784 bp upstream
Tssr44270	transcription start site region 44270	1782 bp upstream
Tssr44271	transcription start site region 44271	1749 bp upstream
Tssr44272	transcription start site region 44272	1609 bp upstream
Tssr44273	transcription start site region 44273	343 bp upstream
Tssr44274	transcription start site region 44274	966 bp downstream