rs248278670 SNP Detail

Summary

• ID
  rs248278670
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128580733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGGTGCA TAAAACAACG
  TTTGACTGTG TTCACCTTTT CTTCATACCC AACCCTAGCA CTTTACCCTC TGGCCTTGGC
  AGATGGCACA GAAGTCGTTG GGCAAAGGTA GAGTCTGAAG GCAGAGCCTT TCAGTTCCTC
  CTACCTGTTA TTGGAGCTGT CAGGACTCTT GAAGCAGCAT GGTTGGTGTG AGGCTGAACG
  S
  AAAGGAGACC AATGAGTGGG GATTTACTGG TAGGGACTGG GGACCCAGGC ATCCTGCATC
  CCCCGCCCCG CCCCAAACCC ACGACTAACT CCCTCCTACC CTTCTCTGAA GTAGGAGCAG
  CACAACAAAG CCTTGTGTTC TTGGAATTGT ATCCTCTTAC AGCTGGGAAT AGAAAGGAGT
  GGGAGAGCAG ACTGCTTGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323535807	CHEV_10_128181920	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248278670					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128580733 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2418	CpG island 2418	641 bp distal
Dgka	diacylglycerol kinase, alpha	9 bp upstream
Gm31504	predicted gene, 31504	83 bp upstream
Gm66065	predicted gene, 66065	1105 bp downstream
Rr224483	regulatory region 224483	within coordinates
Rr385480	regulatory region 385480	1309 bp downstream
Rr402364	regulatory region 402364	within coordinates
Tssr96440	transcription start site region 96440	42 bp downstream
Tssr96441	transcription start site region 96441	73 bp upstream
Tssr96442	transcription start site region 96442	329 bp upstream
Tssr96443	transcription start site region 96443	1593 bp upstream
Tssr99941	transcription start site region 99941	1019 bp upstream
Tssr99942	transcription start site region 99942	954 bp upstream
Tssr99943	transcription start site region 99943	892 bp upstream
Tssr99944	transcription start site region 99944	869 bp upstream
Tssr99945	transcription start site region 99945	779 bp upstream
Tssr99946	transcription start site region 99946	755 bp upstream
Tssr99947	transcription start site region 99947	612 bp upstream
Tssr99948	transcription start site region 99948	582 bp upstream
Tssr99949	transcription start site region 99949	within coordinates
Tssr99950	transcription start site region 99950	182 bp downstream
Tssr99951	transcription start site region 99951	205 bp downstream
Tssr99952	transcription start site region 99952	218 bp downstream
Tssr99953	transcription start site region 99953	223 bp downstream
Tssr99954	transcription start site region 99954	581 bp downstream
Tssr99955	transcription start site region 99955	614 bp downstream
Tssr99956	transcription start site region 99956	1369 bp downstream
Tssr99957	transcription start site region 99957	1436 bp downstream