rs248282082 SNP Detail

Summary

• ID
  rs248282082
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:24025147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGTTATT TATCAGTCAT
  GGAATGTTAG TCCTGACACT AAGTAGAGGT GGGCAAGAAA TGGTTGTTGA AGTGGCTAAG
  TCTATCCGAA ATTAAGATAA CTGGCCTCTG AACTTATACT ATTTCATCCT TTCCACACTA
  TTACAGTTCT AACCAGTGAA CCAGACGTTG TAGACTCAGG GGCCTTCCAG GAACTCTCAC
  W
  GACATTGCGA AGATGTATGC CCTGTCCCAC AGAAAGTATT GATCTTTTCC TTAGTCAGCT
  ATGCTTCAGC CATGTGACTA CCACAATTTT CTGAAGAAGT GCAGCCTTTC ATAATCAAAT
  TCATTCATTG CCCAGATTCT CATCCAGATA AGTTAGGAGA CAGAACTATA GCGTAAGAGA
  AAATAAGGTT ACTCTTATGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324292307	CHEV_13_23933033	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248282082					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:24025147 () rs orientation: forward

Symbol	Name	Function Class
Rr475960	regulatory region 475960	1705 bp distal
Rr475961	regulatory region 475961	1622 bp distal
Slc17a3	solute carrier family 17 (sodium phosphate), member 3	within coordinates
Tssr4011	transcription start site region 4011	1536 bp downstream
Tssr4012	transcription start site region 4012	1432 bp downstream
Tssr118875	transcription start site region 118875	1722 bp downstream
Tssr118876	transcription start site region 118876	1694 bp downstream
Tssr118877	transcription start site region 118877	1577 bp downstream
Tssr118878	transcription start site region 118878	1544 bp downstream