rs248285501 SNP Detail

Summary

• ID
  rs248285501
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:108218035 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTTCACACA AGACTCTAGA
  AATCTAGATC TTTGCCCACA GAAGTCTGTT TTGCACAGCT GCAACAGCCT TGCACAGTGT
  TACCAGCTTC TCTTTGCTGC ATGAACCCAC ACTGCTACTC AGTGCCTTAA TTTATGCTGG
  GTGTTGTGAG ATTCCGACGG AAAAGGTGGA AGGCAGGTGT AGAGTGTGTG GCAGGAGGGG
  K
  GGGGGGTGTG TGTCCTGAGA CCAGCCTGGG CCTACTTGAG GCAGAAAAAA TGATTGTCAA
  ACCTTGCAAG TTTACACATT TGGGCCTAGA ATAGGACATA TCTTAAAACA TACATATCTT
  AAAGGCCAAC AGCTACTGCT TGGGCCCCAC CCTTTAAATA TCTCAAGACA CACCTGGAGC
  TGTTTCTTAT CATAACCTCC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378864986	MGP_WTSI_9_108243167	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248285501					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	G	T	T	T	T	G	T	T	T	T	T	G	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378864986	MGP_WTSI_9_108243167	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:108218035 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22334	CpG island 22334	661 bp distal
Gm57050	predicted gene, 57050	702 bp upstream
Gpx1	glutathione peroxidase 1	494 bp downstream
Rr383883	regulatory region 383883	1018 bp downstream
Rr686785	regulatory region 686785	1550 bp distal
Rr686786	regulatory region 686786	212 bp distal
Rr686787	regulatory region 686787	789 bp proximal
Rr686788	regulatory region 686788	1910 bp proximal
Tssr3010	transcription start site region 3010	1086 bp downstream
Tssr87090	transcription start site region 87090	1766 bp downstream
Tssr87091	transcription start site region 87091	1738 bp downstream
Tssr87092	transcription start site region 87092	1604 bp downstream
Tssr87093	transcription start site region 87093	1589 bp downstream
Tssr87094	transcription start site region 87094	1552 bp downstream
Tssr87095	transcription start site region 87095	1537 bp downstream
Tssr87096	transcription start site region 87096	1526 bp downstream
Tssr87097	transcription start site region 87097	916 bp downstream
Tssr87098	transcription start site region 87098	849 bp downstream
Tssr87099	transcription start site region 87099	520 bp downstream
Tssr91519	transcription start site region 91519	943 bp upstream
Tssr91520	transcription start site region 91520	852 bp upstream
Tssr91521	transcription start site region 91521	756 bp upstream
Tssr91522	transcription start site region 91522	680 bp upstream
Tssr91523	transcription start site region 91523	495 bp upstream