rs248289626 SNP Detail

Summary

• ID
  rs248289626
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139338772 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTGTCTGT GTCCCAGCAC TGACAAGGGA
  AGCCAGGGGG GATTCAGGAT GCCAGAGGCT TGTCCCAGAG AGCAGATGTT GGAAGCAAGA
  GTGGCCTAgg ctagggagat agctcattgt agtgtgtttg cttagcattc acaagagcct
  R
  gttctatccc agaattgcaa ataaaagata gatagataga tagatagata gatagataga
  tagatagata gatagataga tagatacgta ggtaggtagg taggtaggta ggtagataga
  tagatagata gatagataga tagatagata                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704312	CHEV_5_139828971	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248289626					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139338772 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	within coordinates
Tssr49499	transcription start site region 49499	394 bp downstream
Tssr49500	transcription start site region 49500	1192 bp upstream
Tssr49501	transcription start site region 49501	1224 bp upstream