rs248291482 SNP Detail

Summary

• ID
  rs248291482
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84627203 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGGGCACA CACGTGCCGC CTCCGTCGGG GCCGCGGAGC
  TGCGGGGGAG ATGCGGGCAG CCGGCGCCGC CTCGGGGGGC TCCGCCTCGC CCCAGCCCCC
  S
  GAGCTCTGAC GCCGCCCCCG CCCCTCCGCC TCCACGCCTC GCTCCCCGGG AGGGGCGCAG
  ACCCGCGCGC CCGGGGCCGG GGCCGCCTCC GGAGCGCCG                       
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss375388205	MGP_WTSI_8_86424473	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	C	G	G	G	G	C	C	C	G	C	G	G	C	G	C	G	C	G	G	G	G	G	C	G	C	G	G	G	G	G	C	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs248291482					SNP	G	G	G	C	G	G	G	G	C	C	C	G	C	G	G	C	G	C	G	C	G	G	G	G	G	C	G	C	G	G	G	G	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375388205	MGP_WTSI_8_86424473	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84627203 () rs orientation: forward

Symbol	Name	Function Class
Adgrl1	adhesion G protein-coupled receptor L1	within coordinates
Cpgi20662	CpG island 20662	within coordinates
Gm26721	predicted gene, 26721	847 bp upstream
Rr186961	regulatory region 186961	within coordinates
Tssr78300	transcription start site region 78300	605 bp downstream
Tssr78301	transcription start site region 78301	481 bp downstream
Tssr78302	transcription start site region 78302	464 bp downstream
Tssr78303	transcription start site region 78303	409 bp downstream
Tssr78304	transcription start site region 78304	86 bp downstream
Tssr78305	transcription start site region 78305	18 bp upstream
Tssr78306	transcription start site region 78306	46 bp upstream
Tssr78307	transcription start site region 78307	132 bp upstream