rs248299382 SNP Detail

Summary

• ID
  rs248299382
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:81913612 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGCCCACG GTGATGCTGA
  AGAAGCAGCA CTACCTGAGG CCCTCTCTGT TCGTGTACCC GGAGGAGTCC CTGGTCAGTG
  GTGAGTGCCG AGACTCCCTG CTCAGATCCC TGGGAAAGGG TCAAAGTGTA GACACCCTAT
  TTTGGGGGAC GTCCCTGGTA AATGGTTGTT CAAGGGACAG CCAGCGCCTG TCACTGGGTT
  K
  GTTGGGCTGT GTTTCCTAAA TGGCTGAGAT ACCTACAAGA GATGCAGCTG GAGTAAAAAG
  AAGGAGGAGG AAAAAAGAAA GAAAACCTGT AAGACTGTGC TGGGCGTGAG GGGAGAAGGA
  GATGCAGGCC ACTGAGACAG TTGTGTTTTA GGGAGCTCAA CCTTGTTCAG CGCTCTGCTC
  ACCAAGTGTG TGGAGAAGGA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325033198	CHEV_15_81859841	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248299382					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:81913612 () rs orientation: forward

Symbol	Name	Function Class
Rr506381	regulatory region 506381	1269 bp distal
Rr506382	regulatory region 506382	1150 bp proximal
Tssr132336	transcription start site region 132336	1365 bp downstream
Tssr132337	transcription start site region 132337	1336 bp downstream
Tssr132338	transcription start site region 132338	1317 bp downstream
Tssr132339	transcription start site region 132339	1278 bp downstream
Tssr132340	transcription start site region 132340	899 bp downstream
Tssr132341	transcription start site region 132341	198 bp downstream
Tssr135523	transcription start site region 135523	1551 bp upstream
Tssr135524	transcription start site region 135524	175 bp downstream
Xrcc6	X-ray repair complementing defective repair in Chinese hamster cells 6	within coordinates