rs248307629 SNP Detail

Summary

• ID
  rs248307629
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24336229 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GCCGCTTCT GCTGTGTGAA GGTGGGTGTG
  TTGCCAGGAA GGTAGAGTCG GGGCCCCTAA GGAAGATAAT TCCCCAGATC TTCCCAGAAA
  ATCTTTTAAG AAAAGTTGAA CACAGCCAAA AGCAGTTCAG CTGTCTCTGC CCCGGGCAGA
  S
  GGACTGTAAG GAAGTTATCC CACACTGAGT AGGCAACTGA GAGGGGCACC CCCTCCCCCA
  CTCTAAGATA GGGGCTGGGA TCCCCTCCCT CGGGCAAAGG CAGCCAGGAG AGGGGAAAGC
  TCCAATGCAG GCGCAAGGGG TAGAAGGAAA                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322120748	CHEV_7_25421823	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248307629					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24336229 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18554	CpG island 18554	267 bp proximal
Cpgi18555	CpG island 18555	1533 bp proximal
Gm26550	predicted gene, 26550	within coordinates
Lypd3	Ly6/Plaur domain containing 3	within coordinates
Rr167239	regulatory region 167239	within coordinates
Rr170151	regulatory region 170151	1629 bp distal
Tssr2135	transcription start site region 2135	190 bp downstream
Tssr65017	transcription start site region 65017	284 bp downstream
Tssr65018	transcription start site region 65018	240 bp downstream
Tssr65019	transcription start site region 65019	215 bp downstream
Tssr65020	transcription start site region 65020	1972 bp upstream
Tssr65021	transcription start site region 65021	1980 bp upstream