rs248338909 SNP Detail

Summary

• ID
  rs248338909
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:73101809 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAGAGCGA CAATTAGGAA
  GTCACTTAGA CCGCTGGAGG GAAATGGCGG GATGCAGCAG GCTCTGGGCT CTCCTAACAA
  GTCTGTGGGT GTAGACCTGC CTGGAGAGGC CCAGCTGTCC TTTGCGCCCT CTGCTCAATA
  GGACTCTGAG TATAAAAAGA GTACGGTGGG AGCAGGAATC TGGGAAAACG ACCACGACAA
  R
  GATAAATCCA TCGCAAGAGT GATGGCTACA AGTTCAAGTT CTTCGCAGCA ACAACGTGTA
  CACACAAAGT GAACGCAGAC CATTTCTGCT TGTGCCCTAG GCCGGGGTGT CCCTCTCCTG
  CTTCTTTCCC ACAAGTGGAG AGTGAAGACT GTCAGCCCTA CGTAGCAAGG TGGCCAGGGT
  GGTGGGAGTG GTGGGGGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354455928	MGP_WTSI_2_73109522	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	A	G	G	G	A	A	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248338909					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	A	G	G	G	A	A	G	G	A	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354455928	MGP_WTSI_2_73109522	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:73101809 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11766	CpG island 11766	262 bp distal
Cpgi11767	CpG island 11767	within coordinates
Cpgi11768	CpG island 11768	1138 bp proximal
Rr406543	regulatory region 406543	1969 bp distal
Rr559116	regulatory region 559116	1031 bp distal
Rr559117	regulatory region 559117	761 bp distal
Rr559118	regulatory region 559118	within coordinates
Sp9	trans-acting transcription factor 9	Intron
Tssr18369	transcription start site region 18369	461 bp upstream
Tssr18370	transcription start site region 18370	482 bp upstream