rs248340840 SNP Detail

Summary

• ID
  rs248340840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:36007421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTTGTGAG TTGGCACTAT
  GAAGAGAGCC TATGAGAGAC TAGTGGTGAA GCTTAGTTGT AGAGTAAGAT CCCAATGTAT
  TAGATGCCAG TGCAATGTGA TGACCACCAA GAATAGAAGC AACAGTGGAG TGGAGTGAAC
  TAGAGCCTAG AGTTCTTCAA AGGGCAGAGC TGGAGAAGCT ACCCAAGTCC TTTGGAGGAG
  Y
  CTAAAATAAC ATGTTTGGAT CTCAAATAGT GGAACAAGAA GCTATGAAGT TGAAGTTACC
  TTGAAGTCCC CAAGATGTTA GAGGTGTCAG AGCTGTGGAA TACTTGCTAA GAAAAGCTGC
  TAATAGAAAG TGGAACAAGC CCAAGAAAGA ATTGTGTTAT AGTCAACAAA GCTAAAAGGA
  GCTGGGAATC AGACATGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084841	CHEV_4_35954454	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248340840					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36007421 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Lingo2	leucine rich repeat and Ig domain containing 2			Intron
				Noncoding-Transcript-Variant
Tssr41223	transcription start site region 41223			1414 bp upstream