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rs248343231 SNP Detail
Summary
  • ID
    rs248343231
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:70703873 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ACCTGTGAGG CCACTCACAA
GACATCAACT TCACCCATTG TCAAGAGCTT CAACAGGAAT GAGTGTTAGA GACAAAGGTC
CTGAGACGCC ACCACCAGCT CCCCAGCTCC ATCCTATCTT CCCTTCTAAG GTCTTGGAGG
CTTCCCCACA AGCGACCTAC CACTGTTGCG GTGCTCCAAA CCTCCTCCCC ACCTCCTTCT
Y
CTCCTCCTCC CTTTCCTTGG CTTTTATCAT GCTAATATTT GCAGAAAATA TTCAATAAAG
TGAGTCTTTG CACTTGAGAT CTCTGTCTTT CTTACTAAAT GGTAGTAATC AGTTGTTTTT
CCAGTTACCT GGGTTTCTCT TCTAAAGAAG TTAAATGTTT AGTTGCCCTG AAATCCACCA
CACTTAAAGG ATAAATAAAA                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss368707617 MGP_WTSI_6_70676883 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SM/J
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248343231 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C C C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss368707617 MGP_WTSI_6_70676883 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:70703873 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Gm68839 predicted gene, 68839 within coordinates
Igk immunoglobulin kappa chain complex 135 bp downstream
Igkc immunoglobulin kappa constant 135 bp downstream
Rr158 regulatory region 158 938 bp distal
Rr150202 regulatory region 150202 within coordinates
Rr399684 regulatory region 399684 1454 bp downstream
Rr399685 regulatory region 399685 1042 bp downstream
Rr399686 regulatory region 399686 78 bp downstream
Tssr1880 transcription start site region 1880 38 bp downstream
Tssr56956 transcription start site region 56956 1056 bp downstream
Tssr56957 transcription start site region 56957 417 bp downstream
Tssr56958 transcription start site region 56958 401 bp downstream
Tssr56959 transcription start site region 56959 383 bp downstream
Tssr56960 transcription start site region 56960 368 bp downstream
Tssr56961 transcription start site region 56961 352 bp downstream
Tssr56962 transcription start site region 56962 340 bp downstream
Tssr56963 transcription start site region 56963 293 bp downstream
Tssr56964 transcription start site region 56964 282 bp downstream
Tssr56965 transcription start site region 56965 270 bp downstream
Tssr56966 transcription start site region 56966 262 bp downstream
Tssr56967 transcription start site region 56967 242 bp downstream
Tssr56968 transcription start site region 56968 212 bp downstream
Tssr56969 transcription start site region 56969 188 bp downstream
Tssr56970 transcription start site region 56970 169 bp downstream
Tssr56971 transcription start site region 56971 157 bp downstream
Tssr56972 transcription start site region 56972 98 bp downstream
Tssr56973 transcription start site region 56973 87 bp downstream
Tssr56974 transcription start site region 56974 57 bp downstream
Tssr56975 transcription start site region 56975 20 bp downstream
Tssr61321 transcription start site region 61321 380 bp upstream
Tssr61322 transcription start site region 61322 232 bp upstream
Tssr61323 transcription start site region 61323 151 bp upstream
Tssr61324 transcription start site region 61324 74 bp upstream
Tssr61325 transcription start site region 61325 41 bp upstream
Tssr61326 transcription start site region 61326 28 bp upstream
Tssr61327 transcription start site region 61327 2 bp upstream
Tssr61328 transcription start site region 61328 69 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory