rs248348517 SNP Detail

Summary

• ID
  rs248348517
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164585923 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGCCCTG GCGCCAGTCC
  ATTGCTGGCT TTGCCAAGAA TGACCCTGAT GGGAACAAAA GCTCAGTGTT CCTTGTTCCG
  TCCATGGGCT GGAGAGGGGC CTCTGCACCT AGTCCTCGAC AGGGAGGAAC TGGAAAGACA
  ACTTAAGAAG AAAATAGCCG AGCTAATGAT GTAACTTAAG CCTGACACCA TGTCCAACTC
  Y
  GGGAAGAGGA GCATCGGAGT GTTTCAGCAT CAATATGAGA AAACAAAAGG GTTGCAGCTT
  GGTCCCTGTG GACCACATAT GCCACTCTTA GACAAAATGA AAGATAGTCA TCAAAATTAG
  AGAGGGCAGC TGCGATGACT CGGTCTTTCA TGTCTCCTCT GTCACCTTCT CCCCTGCTTC
  TTTTTATTTG TATAGCACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356440042	MGP_WTSI_2_164569503	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248348517					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356440042	MGP_WTSI_2_164569503	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164585923 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12667	CpG island 12667	1574 bp proximal
Rr569686	regulatory region 569686	1354 bp proximal
Rr569687	regulatory region 569687	1918 bp proximal
Tssr21635	transcription start site region 21635	1976 bp upstream
Tssr27522	transcription start site region 27522	895 bp upstream
Tssr27523	transcription start site region 27523	879 bp upstream
Tssr27524	transcription start site region 27524	856 bp upstream
Tssr27525	transcription start site region 27525	822 bp upstream
Tssr27526	transcription start site region 27526	792 bp upstream
Tssr27527	transcription start site region 27527	1893 bp downstream
Tssr27528	transcription start site region 27528	1913 bp downstream
Wfdc3	WAP four-disulfide core domain 3	within coordinates