rs248352593 SNP Detail

Summary

• ID
  rs248352593
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:139336774 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACCACCAT AACAACAAAC AGCAAAATTC
  CTTCCCCAAA ATAACTCCCA AGGTAGCTGA gtggtgttgc ctgcgatccc agccctggga
  ggcagaagca ggaggatttg ggccacacca gccagccaTG CAGAAGCATG GACACTGCGG
  R
  GGAAGTTGTC CAGAGATGCC TGGACACCAG AACACTTAAC TCACCCAGGC AACTCTGGGG
  TCTTCGCTGA AGCCATGGGG ACTCTCATGC TGGCATGGGA GTTCGTGCCT GCTCCCGGAG
  GGGCTGCAGA CTCCAGCCCT GATCATCCTG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321704290	CHEV_5_139826973	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248352593					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:139336774 () rs orientation: forward

Symbol	Name	Function Class
Cyp2w1	cytochrome P450, family 2, subfamily w, polypeptide 1	1598 bp upstream
Rr623253	regulatory region 623253	893 bp distal
Rr623254	regulatory region 623254	135 bp proximal
Rr623255	regulatory region 623255	389 bp proximal
Rr623256	regulatory region 623256	1108 bp proximal
Tssr49499	transcription start site region 49499	1588 bp upstream