rs248353250 SNP Detail

Summary

• ID
  rs248353250
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:131567463 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    aaacaaaat cattttaaaa ttaaaaataa
  attctaatat aaactcttat atatgtacat taattatata taatatctta attatatatt
  atatacacat attatacatt atatattata tgtgcactag tatatacatt gtatataata
  C
  acaatatatt ctatttattt atatataata tatttttaca ttatatactc tatatatata
  tatatatata tatatatata taagatttat gttgtttctt tcaagaaaca taaggaaaaa
  atgttagact caaaacagaa aatgaaaaat                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319974773	CHEV_1_133536302	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248353250					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:131567463 () rs orientation: forward

Symbol	Name	Function Class
Ctse	cathepsin E	within coordinates
Rr28482	regulatory region 28482	62 bp distal
Rr366988	regulatory region 366988	1328 bp downstream
Tssr8635	transcription start site region 8635	1429 bp downstream
Tssr8636	transcription start site region 8636	1387 bp downstream
Tssr8637	transcription start site region 8637	1362 bp downstream
Tssr8638	transcription start site region 8638	1321 bp downstream
Tssr8639	transcription start site region 8639	1241 bp downstream
Tssr8640	transcription start site region 8640	1229 bp downstream