rs248362399 SNP Detail

Summary

• ID
  rs248362399
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:53214074 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTACATCT CAAGGCCCCA
  AACTTTCACT CAGGAAATTC ATCTGAAGGG GGGAAGGTTG GAAGACGGGC AGATAAGAGG
  GGATGGGGAG ATGAGCAGGC CTGGGATGCA TGACGTGAAA TCCACAAAGA ATCAATTAGA
  AGTTTTAAAA AGATTTTATC TGGGAAAACA AATGCCTGAA CGCAATAAGT CAGGTATGGG
  S
  TGGAGGAGGA CTAATGAAGA GTGATTTGGT TTTGTAGATA TAAAAAAAAA TTTTTTCAAG
  ACAGGGTTTC TCTGTGTCGC CTTGGCTGTC CTGGAACTCA CTCTGGAGAC CAGGCTGGCC
  TCATATTTGC TATATAGCCC AGGTTGGCCT TAACCTCCTT GTCCTCCTTT CTCTACATCC
  TGAATCCTGA TTTTAGAAAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323672274	CHEV_11_53136749	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248362399					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:53214074 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2860	CpG island 2860	1344 bp proximal
Gm74485	predicted gene, 74485	within coordinates
Rr447001	regulatory region 447001	1118 bp proximal
Rr447002	regulatory region 447002	1388 bp proximal
Rr447003	regulatory region 447003	1443 bp proximal
Tssr101382	transcription start site region 101382	1427 bp upstream
Tssr107917	transcription start site region 107917	1343 bp downstream
Zcchc10	zinc finger, CCHC domain containing 10	1442 bp upstream