rs248371788 SNP Detail

Summary

• ID
  rs248371788
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:66359411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTT CATGCTTGTA AAAACAACAA
  C
  GCCAATAATG TCAGAAGTCC CAGGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319754061	CHEV_1_66366826	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248371788					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:66359411 () rs orientation: forward

Symbol	Name	Function Class
Map2	microtubule-associated protein 2	within coordinates
Rr412442	regulatory region 412442	977 bp proximal
Rr412443	regulatory region 412443	1478 bp proximal
Tssr7142	transcription start site region 7142	1456 bp upstream
Tssr7143	transcription start site region 7143	1480 bp upstream
Tssr7144	transcription start site region 7144	1501 bp upstream
Tssr7145	transcription start site region 7145	1543 bp upstream
Tssr7146	transcription start site region 7146	1557 bp upstream
Tssr7147	transcription start site region 7147	1573 bp upstream
Tssr7148	transcription start site region 7148	1719 bp upstream
Tssr7149	transcription start site region 7149	1739 bp upstream
Tssr7150	transcription start site region 7150	1769 bp upstream
Tssr7151	transcription start site region 7151	1794 bp upstream
Tssr7152	transcription start site region 7152	1827 bp upstream
Tssr7153	transcription start site region 7153	1856 bp upstream