rs248378382 SNP Detail

Summary

• ID
  rs248378382
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:7351284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACCCCATG TCTACCACAA
  AGGTAGACAT ATACCCTAAA GCTTATCAAA ATTTTGATAA GGACATTTGA AGACTATAAG
  GTGCATCATG TATGACTTAC TACTTGCTGA ACTACAACTT CTTAACCAGA CATAGCCATG
  TGTCTGAGGT TTTTCCTGGG TTATTTGGGG ATTGGGTGTA ACCTCTTCAT CAACTGATAC
  Y
  GCTTTGGAAT CTAATGAACC CTAGAAATAA ATGTACATCA ATTCAGCTGC TCTCACCTGA
  GCAGAACAAG CAAAAGTTGG TGACAAGCTT GCACAAAAAG GCAAGGTCTA AAACATGTTC
  TCTTGGCTCC TGGCCTTATT TTAAAAATTG ATTTAATTCT ATTTTTTCAA AAAAAAAAAA
  AAGGCAGCTT TGAAAATTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376560288	MGP_WTSI_9_7351284	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248378382					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376560288	MGP_WTSI_9_7351284	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:7351284 () rs orientation: forward

Symbol	Name	Function Class
Mmp12	matrix metallopeptidase 12	within coordinates
Tssr83703	transcription start site region 83703	1553 bp downstream
Tssr83704	transcription start site region 83704	1519 bp downstream
Tssr83705	transcription start site region 83705	1257 bp downstream
Tssr83706	transcription start site region 83706	1230 bp downstream
Tssr83707	transcription start site region 83707	1208 bp downstream
Tssr83708	transcription start site region 83708	1190 bp downstream
Tssr83709	transcription start site region 83709	1167 bp downstream
Tssr83710	transcription start site region 83710	650 bp downstream
Tssr83711	transcription start site region 83711	168 bp downstream
Tssr83712	transcription start site region 83712	689 bp upstream
Tssr83713	transcription start site region 83713	1091 bp upstream
Tssr83714	transcription start site region 83714	1263 bp upstream
Tssr83715	transcription start site region 83715	1315 bp upstream
Tssr83716	transcription start site region 83716	1586 bp upstream
Tssr83717	transcription start site region 83717	1627 bp upstream
Tssr83718	transcription start site region 83718	1647 bp upstream
Tssr83719	transcription start site region 83719	1673 bp upstream
Tssr83720	transcription start site region 83720	1702 bp upstream
Tssr83721	transcription start site region 83721	1954 bp upstream
Tssr88066	transcription start site region 88066	1161 bp upstream
Tssr88067	transcription start site region 88067	1696 bp downstream
Tssr88068	transcription start site region 88068	1744 bp downstream