rs248384251 SNP Detail

Summary

• ID
  rs248384251
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70702425 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATCTACAGC CAGCAAAAGT
  CATGGTAAAT ATTCTTTGAC TGAACTCTCA CTAAACTCCT CTAAATTATA TGTCATATTA
  ACTGGTTAAA TTAATATAAA TTTGTGACAT GACCTTAACT GGTTAGGTAG GATATTTTTC
  TTCATGCAAA AATATGACTA ATAATAATTT AGCACAAAAA TATTTCCCAA TACTTTAATT
  Y
  TGTGATAGAA AAATGTTTAA CTCAGCTACT ATAATCCCAT AATTTTGAAA ACTATTTATT
  AGCTTTTGTG TTTGACCCTT CCCTAGCCAA AGGCAACTAT TTAAGGACCC TTTAAAACTC
  TTGAAACTAC TTTAGAGTCA TTAAGTTATT TAACCACTTT TAATTACTTT AAAATGATGT
  CAATTCCCTT TTAACTATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368707596	MGP_WTSI_6_70675435	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248384251					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368707596	MGP_WTSI_6_70675435	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70702425 () rs orientation: forward

Symbol	Name	Function Class
Gm68839	predicted gene, 68839	1005 bp downstream
Igk	immunoglobulin kappa chain complex	within coordinates
Igkc	immunoglobulin kappa constant	994 bp upstream
Igkj4	immunoglobulin kappa joining 4	1856 bp downstream
Igkj5	immunoglobulin kappa joining 5	1518 bp downstream
Rr158	regulatory region 158	510 bp proximal
Rr150202	regulatory region 150202	within coordinates
Rr399684	regulatory region 399684	6 bp downstream
Rr399685	regulatory region 399685	106 bp upstream
Rr399686	regulatory region 399686	1070 bp upstream
Tssr1880	transcription start site region 1880	1409 bp upstream
Tssr56953	transcription start site region 56953	1894 bp downstream
Tssr56954	transcription start site region 56954	1762 bp downstream
Tssr56955	transcription start site region 56955	1541 bp downstream
Tssr56956	transcription start site region 56956	367 bp upstream
Tssr56957	transcription start site region 56957	989 bp upstream
Tssr56958	transcription start site region 56958	1036 bp upstream
Tssr56959	transcription start site region 56959	1054 bp upstream
Tssr56960	transcription start site region 56960	1077 bp upstream
Tssr56961	transcription start site region 56961	1091 bp upstream
Tssr56962	transcription start site region 56962	1099 bp upstream
Tssr56963	transcription start site region 56963	1148 bp upstream
Tssr56964	transcription start site region 56964	1163 bp upstream
Tssr56965	transcription start site region 56965	1169 bp upstream
Tssr56966	transcription start site region 56966	1180 bp upstream
Tssr56967	transcription start site region 56967	1195 bp upstream
Tssr56968	transcription start site region 56968	1219 bp upstream
Tssr56969	transcription start site region 56969	1255 bp upstream
Tssr56970	transcription start site region 56970	1268 bp upstream
Tssr56971	transcription start site region 56971	1288 bp upstream
Tssr56972	transcription start site region 56972	1314 bp upstream
Tssr56973	transcription start site region 56973	1352 bp upstream
Tssr56974	transcription start site region 56974	1384 bp upstream
Tssr56975	transcription start site region 56975	1417 bp upstream
Tssr61321	transcription start site region 61321	1041 bp downstream
Tssr61322	transcription start site region 61322	1206 bp downstream
Tssr61323	transcription start site region 61323	1221 bp downstream
Tssr61324	transcription start site region 61324	1311 bp downstream
Tssr61325	transcription start site region 61325	1377 bp downstream
Tssr61326	transcription start site region 61326	1412 bp downstream
Tssr61327	transcription start site region 61327	1426 bp downstream
Tssr61328	transcription start site region 61328	1517 bp downstream