rs248389711 SNP Detail

Summary

• ID
  rs248389711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19428838 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGGCTCT GGGGGTGTGC
  TCCTAGCCCC TGGGCATGAA GTGTGGCTGT CTAGGGCCCT GTCACTAGCC CACCGACCCA
  TCTTCTCATT GGGCCTAATG AGTCATGTGT GGGAGTGGTG CCTGCCTCCA GATAATGCTG
  AGTTTGATGC CAGGAAAAGC TGCAGGCTCG GGGTGTGCCA GAGGCAGTTG AGTTCTGAAG
  Y
  CTTGGCCCGA CCCAAGACAC AGCTCAAGCC CTAGCCTGCC CCTGTTAGTG GGAGCCCTGC
  TGAGTCCCTG AGAACTGAGG GGGTGGGAGG AGAAGCCAGC CAGGGGCTCT CCAGCTTCCA
  CCATGACCCC TTTGAGTACC AGGACATGGG GAGAATGGTT TTGTGTCCCC AGCCTGAACT
  CACTCTCCAT ACACTTGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370754771	MGP_WTSI_7_20280262	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248389711					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370754771	MGP_WTSI_7_20280262	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19428838 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	1196 bp downstream
Cpgi18507	CpG island 18507	1608 bp proximal
Rr155346	regulatory region 155346	1163 bp proximal
Rr167192	regulatory region 167192	1637 bp distal
Rr167193	regulatory region 167193	1237 bp distal
Rr167194	regulatory region 167194	1562 bp proximal
Tssr2112	transcription start site region 2112	1538 bp upstream
Tssr2113	transcription start site region 2113	1563 bp upstream
Tssr2114	transcription start site region 2114	1678 bp upstream
Tssr2115	transcription start site region 2115	1714 bp upstream
Tssr2116	transcription start site region 2116	1789 bp upstream
Tssr2117	transcription start site region 2117	1811 bp upstream
Tssr2118	transcription start site region 2118	1918 bp upstream
Tssr2119	transcription start site region 2119	1927 bp downstream
Tssr2120	transcription start site region 2120	1990 bp upstream
Tssr64880	transcription start site region 64880	1355 bp upstream
Tssr64881	transcription start site region 64881	1407 bp upstream
Tssr64882	transcription start site region 64882	1451 bp upstream
Tssr64883	transcription start site region 64883	1489 bp upstream
Tssr64884	transcription start site region 64884	1516 bp upstream
Tssr64885	transcription start site region 64885	1595 bp upstream
Tssr64886	transcription start site region 64886	1616 bp upstream
Tssr64887	transcription start site region 64887	1648 bp upstream
Tssr64888	transcription start site region 64888	1867 bp upstream
Tssr64889	transcription start site region 64889	1961 bp upstream
Tssr70973	transcription start site region 70973	1379 bp downstream
Tssr70974	transcription start site region 70974	1425 bp downstream
Tssr70975	transcription start site region 70975	1453 bp downstream
Tssr70976	transcription start site region 70976	1488 bp downstream
Tssr70977	transcription start site region 70977	1536 bp downstream
Tssr70978	transcription start site region 70978	1551 bp downstream
Tssr70979	transcription start site region 70979	1575 bp downstream
Tssr70980	transcription start site region 70980	1585 bp downstream
Tssr70981	transcription start site region 70981	1606 bp downstream
Tssr70982	transcription start site region 70982	1620 bp downstream
Tssr70983	transcription start site region 70983	1653 bp downstream
Tssr70984	transcription start site region 70984	1670 bp downstream
Tssr70985	transcription start site region 70985	1735 bp downstream
Tssr70986	transcription start site region 70986	1768 bp downstream
Tssr70987	transcription start site region 70987	1798 bp downstream
Tssr70988	transcription start site region 70988	1842 bp downstream
Tssr70989	transcription start site region 70989	1881 bp downstream
Tssr70990	transcription start site region 70990	1893 bp downstream
Tssr70991	transcription start site region 70991	1938 bp downstream
Tssr70992	transcription start site region 70992	1946 bp downstream
Tssr70993	transcription start site region 70993	1955 bp downstream
Tssr70994	transcription start site region 70994	1996 bp downstream