rs248400806 SNP Detail

Summary

• ID
  rs248400806
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:110361841 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCCGCCGC CGCGATCGGA
  CCAGCGGCCG CCTCCCCTCC GGTCCCCTCC CCCGCATCGG CCTGCCGCGG GGAGGGGGCT
  AGCGTCGCCG CCTCCAGCCG CTCCTCATGA AGCCGCTGCC GTCGCAGCAG CCGCCACCGA
  AGATGGGGGA TTTCTACGAT CCCGAGCACC CGACCCCTGA GTAAGTCTCT GCTCCGCGGT
  Y
  TCCCGCTGTC GTTGGTCGCT CCAGCCCGAG GGCGGCGCGT CCTGACCGGT GGCGGCGCGC
  GGAGTAACGG GCCCCGGGCG GCTTCTCGCG GTCGTGGTGG AGGGCAGGCC GGGCGGAGCT
  CCTGGAGGCC GCCTCGCTTG GCCTCGGCTG GCCCGGCGGT TGGGCCTGGC GCGGAGAAGG
  CTGCTCGCGT CGCCGCGGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378905111	MGP_WTSI_9_110435277	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248400806					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378905111	MGP_WTSI_9_110435277	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110361841 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22381	CpG island 22381	within coordinates
Gm69936	predicted gene, 69936	416 bp upstream
Rr687129	regulatory region 687129	1696 bp distal
Rr687130	regulatory region 687130	427 bp distal
Rr687131	regulatory region 687131	406 bp distal
Rr687132	regulatory region 687132	166 bp distal
Rr687133	regulatory region 687133	within coordinates
Rr687134	regulatory region 687134	75 bp proximal
Rr687135	regulatory region 687135	304 bp proximal
Setd2	SET domain containing 2	within coordinates
Tssr3033	transcription start site region 3033	45 bp downstream
Tssr87391	transcription start site region 87391	306 bp downstream
Tssr87392	transcription start site region 87392	173 bp downstream
Tssr87393	transcription start site region 87393	133 bp downstream
Tssr87394	transcription start site region 87394	81 bp downstream
Tssr91630	transcription start site region 91630	411 bp upstream
Tssr91631	transcription start site region 91631	2 bp downstream
Tssr91632	transcription start site region 91632	7 bp downstream
Tssr91633	transcription start site region 91633	35 bp downstream
Tssr91634	transcription start site region 91634	59 bp downstream
Tssr91635	transcription start site region 91635	145 bp downstream
Tssr91636	transcription start site region 91636	171 bp downstream