rs248406426 SNP Detail

Summary

• ID
  rs248406426
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:6364570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCCTGGGC CCTGTATTGC
  AAGCACTTTT ACCTGCTAAG CCATCTTGCT GGCTCAACGG AGGGACAGCA GAACATATCA
  GCAAATTATA TGTCAGGTAA GAAATTAAAC CCAGAATATG CAAAGAACTC CTAAAATGCA
  AACTATAACC AAAACAATCA GTTAGTTAAA AATAAAGGCA AGTGCTCTTA ACCATGGGGC
  Y
  TTCTCCCCAT CCCTGTCTCT ACCTTATCCA CTATACTGAC TCAGTCTTGC CTAGACTGTC
  TAACCAGTCA GTCTCCATTG CCTCCAGGCC TGGACTTACA GACTCCTCCC AATGGCCTGG
  CTTTTACATA GGTGCTGGGG ATCCAAACGC AGGTAGGTCC TTGAGCTTGT CCTGCAAGCA
  CTTAACAGTT TTGAGAAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382296425	MGP_WTSI_11_6314573	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248406426					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382296425	MGP_WTSI_11_6314573	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:6364570 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2558	CpG island 2558	732 bp proximal
Gm71788	predicted gene, 71788	623 bp downstream
Ppia	peptidylprolyl isomerase A	1297 bp upstream
Rr246944	regulatory region 246944	30 bp proximal
Rr402411	regulatory region 402411	1207 bp upstream
Tssr100250	transcription start site region 100250	1204 bp upstream
Tssr100251	transcription start site region 100251	1233 bp upstream
Tssr100252	transcription start site region 100252	1260 bp upstream
Tssr100253	transcription start site region 100253	1657 bp upstream
Tssr100254	transcription start site region 100254	1688 bp upstream
Tssr100255	transcription start site region 100255	1759 bp upstream
Tssr106715	transcription start site region 106715	1079 bp downstream