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rs248442558 SNP Detail
Summary
  • ID
    rs248442558
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr3:37693368 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATTTAGATCA TGGAGTTTTT
    GTTTATCAAA TACCATTCCT GATAAAATTC CCTGGAAAAA TATTTTCTAT CAATATTTTG
    GGGGTCTTAG GTTATTTTTA AAACTCTATG GAATTTTTAA TTCCACATAC AGCCCTTTTC
    ACTACATCCT GAGCTATAGC GTCCATATAA TAAATAACCA AATTCCATAG TATGTAAAGA
    M
    GCAAAAAGCA TTCCCAGCTT ACTAAAGTCC CCCACCCCGT GACAGACATA TGGCTAAAGC
    TAAAACTTCC TGATGAGTTA TGCTTATTTT ATTTCATTTA AAATGCATTG GTGTTTTGGA
    CAAAATTATA CAAACATTAC AAAGCAGGAA GAACTTGGGC CCCGTTTTCT CCCCTTCCCC
    TCCCCCCGTG TAATTTTAGG                                            
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss357588034 MGP_WTSI_3_37538141 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs248442558 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss357588034 MGP_WTSI_3_37538141 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:37693368 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi13100 CpG island 13100 462 bp proximal
Gm42922 predicted gene 42922 886 bp downstream
Rr575523 regulatory region 575523 238 bp proximal
Rr575524 regulatory region 575524 872 bp proximal
Rr575525 regulatory region 575525 1557 bp proximal
Rr575526 regulatory region 575526 1665 bp proximal
Spry1 sprouty RTK signaling antagonist 1 728 bp upstream
Tssr28908 transcription start site region 28908 445 bp upstream
Tssr28909 transcription start site region 28909 686 bp upstream
Tssr28910 transcription start site region 28910 709 bp upstream
Tssr28911 transcription start site region 28911 726 bp upstream
Tssr28912 transcription start site region 28912 766 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory