rs248455477 SNP Detail

Summary

• ID
  rs248455477
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:170159949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGACACAC TGCCAGGAAT
  TGTGTGGGAA GACTTTCAGT TTCTTTGGGT TCACATGGAC TTAGCAGTTC TTGGTGATCC
  TGAAAGATTT CTGCAGAAAG AAGCCAAAGT GTTGAGCCCA AGGCCTGGCC ACACATTAGT
  CCTGTCTAGA TGAACAGGGG TTTAAAAATA AGGGGGCATC AAGGTGAAGC CAGCAGGGGC
  Y
  GACTTAGAGA GGAGACCCAC CCAAGCCAAC TGCTCGAAGT CAAAAGCGAT GAATCCCCAT
  ATCCAGCTGT GCCCGGTGCT GTCTTGCTAC ATCTTTAGTA AATGTTCTTT TAGTTGTATG
  CGTATGAATA TTTTGCTTGC ATATATTTGT GTACACCATA GGTGTTCCTA GGGCCTATGG
  AGGCCAGAAG AGGGCATCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356578622	MGP_WTSI_2_170143529	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248455477					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356578622	MGP_WTSI_2_170143529	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:170159949 () rs orientation: forward

Symbol	Name	Function Class
9430096G21Rik	RIKEN cDNA 9430096G21 gene	613 bp downstream
Cpgi12802	CpG island 12802	1121 bp proximal
Gm34542	predicted gene, 34542	within coordinates
Rr397536	regulatory region 397536	1607 bp downstream
Rr397537	regulatory region 397537	1336 bp upstream
Rr571405	regulatory region 571405	180 bp proximal
Rr571406	regulatory region 571406	1196 bp proximal
Rr571407	regulatory region 571407	1339 bp proximal
Rr571408	regulatory region 571408	1697 bp proximal
Tssr21924	transcription start site region 21924	1543 bp downstream
Tssr21925	transcription start site region 21925	1469 bp downstream