rs248455996 SNP Detail

Summary

• ID
  rs248455996
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:44508863 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAAGG AAAAAAAAAG
  CACCCAAACT CAAAACCAAC CAACCAAACA ACCCCCAACA GCCAGGCATA TATCTCTGTT
  TTTTCTTAAT TTTGGTCTTT TCGTTGGATT TTCCCTTTCT TTTTTTTTCC CCTCGCCCCC
  CTCCTTGTTA TCGCTCAGTT TTGAGCGAAG GTTTACATTT TTAAAAATTT TGCTTTTCAG
  C
  CCGCCTTGAT GTAGCGCGAG TCTCATCGAC TCAAAAAAAA AAAAAAAAAT CTGTGGTTGG
  CGTTTTTTTT TTTTTTTCCT TTTTTTTTTT TTCAAATATT TTCAAAGGGG AGGAGATTTT
  TCCACAAGAA AAGGTTGTTT TCATGTTTGG GATCCAGGAA AGCATCCAAC GGAGTGGAAG
  CAGTATGAAG GAAGAGCCGC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383201272	MGP_WTSI_11_44431538	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248455996					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383201272	MGP_WTSI_11_44431538	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:44508863 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2762	CpG island 2762	733 bp distal
Cpgi2763	CpG island 2763	109 bp proximal
Cpgi2764	CpG island 2764	1736 bp proximal
D11Mit175	DNA segment, Chr 11, Massachusetts Institute of Technology 175	1445 bp proximal
Ebf1	early B cell factor 1	within coordinates
Gm37695	predicted gene, 37695	1020 bp upstream
Rr369170	regulatory region 369170	723 bp downstream
Rr445653	regulatory region 445653	709 bp distal
Rr445654	regulatory region 445654	within coordinates
Tssr101029	transcription start site region 101029	734 bp downstream
Tssr101030	transcription start site region 101030	700 bp downstream
Tssr101031	transcription start site region 101031	675 bp downstream
Tssr101032	transcription start site region 101032	639 bp downstream
Tssr101033	transcription start site region 101033	523 bp downstream
Tssr101034	transcription start site region 101034	493 bp downstream
Tssr101035	transcription start site region 101035	478 bp downstream
Tssr101036	transcription start site region 101036	406 bp downstream
Tssr101037	transcription start site region 101037	376 bp downstream
Tssr101038	transcription start site region 101038	333 bp downstream
Tssr101039	transcription start site region 101039	149 bp downstream
Tssr101040	transcription start site region 101040	101 bp downstream
Tssr101041	transcription start site region 101041	88 bp upstream
Tssr101042	transcription start site region 101042	149 bp upstream
Tssr101043	transcription start site region 101043	172 bp upstream
Tssr101044	transcription start site region 101044	542 bp upstream
Tssr107570	transcription start site region 107570	29 bp downstream