rs248460890 SNP Detail

Summary

• ID
  rs248460890
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:80634599 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGCGCCC CGACGCTCCT
  TTCTCTCCCG CCTACCGAAG ACGGAAGTCC ATCCGCTGGG CCTGCGCACA CACGAAACGC
  CGACGCCTTT GCTCCCGGAA GGGATCGCTT CGTCGGTCGT GCGCACGCGC GCGGCGAAAC
  CGCGGCCTTG GCGGAGATTA AACCCGGATA GCGAGGCCTT AGCGTTGGTG AGGAGCTGCA
  M
  AGTTTGTCGG TGGCGGCTGC TCCGTCGGGG AGGCTTGAAG GTGGGAGCGA AAGCCCGGGG
  GCGGGACGGG GAGAGGCAGC GGCCGCCCTC TTGCCTCAGG ATCGGCGCGC GCCCGCCGGG
  AGAGCGCGCT CTCGCGAGGC CCGTTGGGTC GCCGCGTGAT TGCTGGCTTG GGTGGCGCTT
  CTGTGGCCTC CAGGGTGGTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381025198	MGP_WTSI_10_80261510	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248460890					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381025198	MGP_WTSI_10_80261510	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:80634599 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1908	CpG island 1908	within coordinates
Plekhj1	pleckstrin homology domain containing, family J member 1	195 bp upstream
Rr435393	regulatory region 435393	557 bp distal
Rr435394	regulatory region 435394	150 bp distal
Rr435395	regulatory region 435395	23 bp distal
Rr435396	regulatory region 435396	within coordinates
Sf3a2	splicing factor 3a, subunit 2	within coordinates
Tssr94606	transcription start site region 94606	798 bp downstream
Tssr94607	transcription start site region 94607	655 bp downstream
Tssr94608	transcription start site region 94608	149 bp downstream
Tssr94609	transcription start site region 94609	123 bp downstream
Tssr94610	transcription start site region 94610	8 bp downstream
Tssr94611	transcription start site region 94611	137 bp upstream
Tssr98507	transcription start site region 98507	874 bp upstream
Tssr98508	transcription start site region 98508	815 bp upstream
Tssr98509	transcription start site region 98509	775 bp upstream
Tssr98510	transcription start site region 98510	762 bp upstream
Tssr98511	transcription start site region 98511	549 bp upstream
Tssr98512	transcription start site region 98512	466 bp upstream
Tssr98513	transcription start site region 98513	189 bp upstream
Tssr98514	transcription start site region 98514	90 bp downstream