rs248465878 SNP Detail

Summary

• ID
  rs248465878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25674455 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCTGTGG GTATAGCCAG
  TTATGAGATG TTCTACTTCT CCACCCTCAC AGCTGGCTAG CCCCTCAGAC AGTGGCTTTC
  CTGGGGTCTG TGGATATCAT GATGCTCTGG TCCAGGGTCA GTAAGTGATG TTTGGAGGAG
  ACAAGGTAGG GACTGATCCT GGATGCTCAG ATCTGCTGCT GAGGGTGCTT GGTTAAAAAT
  Y
  AGACAAACAA CTTTGCTACA TTTGGTGCAG GGGGCACCTC TTGCCCTTAT CAGCTTTATT
  AGTCCACAGC ATGGTTAAGC ATCTTTCCCT GGGAGCAGCC TGAGCTTGCT GAGGTCTTTG
  CCCCCCCCCA AATACCTAGC TGACACCCTC ATTGTGCTTC CCTGTCCCTT TGTAACTCAG
  AGATGCTCAA GAGGTTGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325337995	CHEV_17_25592426	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248465878					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25674455 () rs orientation: forward

Symbol	Name	Function Class
Gm63608	predicted gene, 63608	within coordinates
Rr523577	regulatory region 523577	1173 bp proximal
Tekt4	tektin 4	within coordinates
Tssr143159	transcription start site region 143159	1739 bp downstream
Tssr143160	transcription start site region 143160	928 bp downstream