rs248468660 SNP Detail

Summary

• ID
  rs248468660
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:18913790 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGGACCCCA GGCTCCTCTC
  GGACCTTGCT GAAGAACAGG GCTATACCGT TGCGGTATAG CCTTCATCAC TCTGGTCTTT
  CTGCAGCAGC CGTCGCTACT TATCACCTGA GCGCCTGGCC TCTGTGCGTC GCGAGGACCC
  CCGTAGCCGT ACCACATCTT CCAGTAGTAA TTGTAGCGCC AAAAAAGAAG GGTAAGTTCG
  Y
  GGGTGGGGCC CCAACCCTAG ACAGGCAAGG GAATGTATGG GGAATTAAAG CCAGACCCCT
  GGCCACGAGG TTATATCCTA GAGTGACTCT GGTGGAGTCA GAACACAACA GTCAAGAGTC
  TCTGTAGGGA ATGTAAGAAT CAGAGGTAGG ATTATGGTCA GAATTTGGGG GTGTAACTGG
  AATTAACTTG GTAGAACCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370743487	MGP_WTSI_7_19765214	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248468660					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370743487	MGP_WTSI_7_19765214	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:18913790 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18451	CpG island 18451	1571 bp distal
Cpgi18452	CpG island 18452	within coordinates
Cpgi18453	CpG island 18453	1211 bp proximal
Eml2	echinoderm microtubule associated protein like 2	within coordinates
Mir330	microRNA 330	1600 bp upstream
Rr155272	regulatory region 155272	990 bp distal
Rr167138	regulatory region 167138	within coordinates
Rr167139	regulatory region 167139	1010 bp proximal
Tssr64795	transcription start site region 64795	1626 bp downstream
Tssr64796	transcription start site region 64796	828 bp downstream
Tssr64797	transcription start site region 64797	1297 bp upstream
Tssr64798	transcription start site region 64798	1346 bp upstream
Tssr64799	transcription start site region 64799	1428 bp upstream
Tssr64800	transcription start site region 64800	1542 bp upstream