rs248478441 SNP Detail

Summary

• ID
  rs248478441
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:115569600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCCTTCCC GGACTTTGGT
  CAGTGAGCTC CTTGCTTTTG TAGAAGACAC GAACCTTCTT TATCCTTACA GGGTATTTAT
  GAACAGGGAG CTAGCTTGCA AGGAAATTGG AAATAGGGGG AAAAAAAGTG CTCTGTCGAC
  CAGATCTTAG GAGACCCTGC CTGTTTGGTA TTCAAACTCC TGGAACATTT TGCTTCTTTC
  Y
  CAGTGTTCCC AGTGTCTTGG ACCCTGCAGG GGGCGCTGGC GGAGGCCAGC TCAGGGGTTC
  CAGAAGGCAA AGGAGAAAAG CAGAGGAAGA GGCTCACTTG ATGATGGGGG GTGTCTGTCT
  GCCAAGGGTG GGGAGGACCG GGACAATGTG ACCTCTCTCC ACACTCCCCC ATTCTTTCTT
  CCCCAGCCCT GGGCCTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366356352	MGP_WTSI_5_115881550	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248478441					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366356352	MGP_WTSI_5_115881550	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115569600 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16370	CpG island 16370	579 bp distal
Msi1	musashi RNA-binding protein 1	within coordinates
Rr618243	regulatory region 618243	1932 bp distal
Rr618244	regulatory region 618244	19 bp proximal
Tssr48230	transcription start site region 48230	1973 bp downstream
Tssr48231	transcription start site region 48231	1928 bp downstream
Tssr48232	transcription start site region 48232	1858 bp downstream
Tssr48233	transcription start site region 48233	1834 bp downstream
Tssr48234	transcription start site region 48234	1807 bp downstream
Tssr48235	transcription start site region 48235	1771 bp downstream
Tssr48236	transcription start site region 48236	1549 bp downstream
Tssr48237	transcription start site region 48237	1205 bp downstream
Tssr48238	transcription start site region 48238	912 bp downstream
Tssr48239	transcription start site region 48239	159 bp downstream
Tssr48240	transcription start site region 48240	466 bp upstream
Tssr48241	transcription start site region 48241	479 bp upstream