rs248494880 SNP Detail

Summary

• ID
  rs248494880
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:61909148 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACAGGAC TCCGGTTTCC
  CTCTAGGATC TGAGTCTACC TCATCTTTCA TTCCCCTTTC TGGTTGTAGC ACGTTGCCGC
  GCTTGACTAA ATGGTACTAG AGACGTGCAC CTGTTCGGTG CTGGATTGAA TACAGCGAAA
  AGAATATCGT GGTATACGCG TGCCTTTCAC ACCAGCCTTC GTTCTTTGCA GAGGCTTTTG
  S
  ACATTTGAGA GGTTAGTGTA ATACCCTGTA CGGACCAAGA ATGGAGGATG CTGCAGACAG
  GTGGTCCTCT CTCAGCTAGA GTTTGCTTAG TACGTCCTTC TCTCCAGAAC CACAGATGAT
  GGATGGTACC CAGGACTGCT CTCAGATGAG AGTTCTGAAA TAGAACAGAT TCGGGGGGGT
  CTTCTGTAGG AACTACTGAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394270317	MGP_WTSI_15_61868854	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	G	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248494880					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	G	G	C	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394270317	MGP_WTSI_15_61868854	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:61909148 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7132	CpG island 7132	26 bp distal
Cpgi7133	CpG island 7133	337 bp proximal
Gm54427	predicted gene, 54427	730 bp upstream
Pvt1	Pvt1 oncogene	687 bp upstream
Rr390819	regulatory region 390819	1067 bp upstream
Rr503088	regulatory region 503088	173 bp proximal
Rr503089	regulatory region 503089	1331 bp proximal
Tssr131427	transcription start site region 131427	697 bp upstream
Tssr131428	transcription start site region 131428	1917 bp upstream
Tssr131429	transcription start site region 131429	1985 bp upstream
Tssr134486	transcription start site region 134486	1839 bp downstream
Tssr134487	transcription start site region 134487	1860 bp downstream