rs248499854 SNP Detail

Summary

• ID
  rs248499854
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75120289 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCATCCTC GCTTTCTCCC
  TGACGTTTCA GGTGAGTTTC TTCATTCCAC ATGCACTGTA TGCACCTGCT CCGTGCATCA
  CCCTGCTACT TGAGGGGAGG CACAGGAAGG CCATTTATCT CCTAAGGCAT CCTGTATGCC
  CTTCCATCGT TTTTTTTTTT TTTTTTTTTT TTTTTAAGAA AATTGCCTGA AATGAGAATT
  R
  TTTCTTTTCC AAAATTAATG TTCTTGTGAG TTTAGTAGTC AAAACTATAT AGCATTTAAA
  GCTGGGTTCA GAAACAGCAT ATCGTACACC TTGTAGTTGG TGGGTAAAGG GAATGCTCTG
  GACTTCACAT AGTGGTTCAG GCCTGGAAGC GAGAGACAGA GGGATTACTG AAAAATTGAG
  ACCAAGAATG TTAAAGAGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350135789	MGP_WTSI_1_75140219	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248499854					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350135789	MGP_WTSI_1_75140219	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75120289 () rs orientation: forward

Symbol	Name	Function Class
Cnppd1	cyclin Pas1/PHO80 domain containing 1	915 bp upstream
Cpgi410	CpG island 410	1578 bp distal
Cpgi411	CpG island 411	133 bp distal
Gm57175	predicted gene, 57175	1406 bp downstream
Retreg2	reticulophagy regulator family member 2	within coordinates
Tssr7484	transcription start site region 7484	1940 bp downstream
Tssr7485	transcription start site region 7485	1847 bp downstream
Tssr7486	transcription start site region 7486	1162 bp downstream
Tssr7487	transcription start site region 7487	1126 bp downstream
Tssr7488	transcription start site region 7488	903 bp downstream
Tssr7489	transcription start site region 7489	872 bp downstream
Tssr7490	transcription start site region 7490	848 bp downstream
Tssr7491	transcription start site region 7491	821 bp downstream
Tssr7492	transcription start site region 7492	808 bp downstream
Tssr7493	transcription start site region 7493	374 bp downstream
Tssr12354	transcription start site region 12354	1997 bp upstream
Tssr12355	transcription start site region 12355	1902 bp upstream
Tssr12356	transcription start site region 12356	1842 bp upstream
Tssr12357	transcription start site region 12357	1291 bp upstream
Tssr12358	transcription start site region 12358	1221 bp upstream
Tssr12359	transcription start site region 12359	920 bp upstream