rs248506938 SNP Detail

Summary

• ID
  rs248506938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152103418 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGCCCGG ATTCATGGCA
  TTTGTTATCA CAGCCAGCAC ATACCATTTT AAATTTTTTA TCATTTACTT ATTATGTGCC
  TGTGTATCTT GGATATTGTA TGTGCTCAGC TCTCTGGAAG CCAGAAGAGG GTGTCTGATC
  CCCAGGATCA GTATTACAGG ACTTTCTAAA CTGTTCAGAG TAAGGGGTCT GAACTTTGGA
  Y
  CGCAAGACAG AGCAGCAAGC ACTCTTAACC ACTGTCTGTC TCTTTGAAAC TACAAAAGTG
  TACTTACTAC CTACAGAAAG GGAGAGTAAA ATGCTCTTTA TTCTGTTTTA CAAACTTCTC
  AGTTTTCTAC CCTGAACCTG ATCATTTTGT GGTCCGTGCT TTGTCCTAAG TTGTCAGGGC
  TAAGTTGGAG GGCTGATTTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360265612	MGP_WTSI_3_152060745	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248506938					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360265612	MGP_WTSI_3_152060745	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152103418 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13950	CpG island 13950			508 bp distal
Rr587543	regulatory region 587543			1639 bp distal
Rr587544	regulatory region 587544			1859 bp distal
Rr587545	regulatory region 587545			1799 bp distal
Rr587546	regulatory region 587546			1710 bp distal
Rr587547	regulatory region 587547			1077 bp distal
Rr587548	regulatory region 587548			1520 bp distal
Rr587549	regulatory region 587549			1485 bp distal
Rr587550	regulatory region 587550			1063 bp distal
Rr587551	regulatory region 587551			within coordinates
Rr587552	regulatory region 587552			63 bp distal
Tssr32411	transcription start site region 32411			1722 bp downstream
Tssr32412	transcription start site region 32412			1699 bp downstream
Tssr32413	transcription start site region 32413			1387 bp downstream
Tssr32414	transcription start site region 32414			1079 bp downstream
Zzz3	zinc finger, ZZ domain containing 3			Intron
				Noncoding-Transcript-Variant