rs248507076 SNP Detail

Summary

• ID
  rs248507076
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:98180951 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAATAT CTAGTCCCAC
  TCTCCCTGAG CCCAGTTATC ACGGGTTTCA CCTTGAAAAG GCTAAGTAGT GGAGGAGATA
  AAGCCAGGTA ACTTGTAAGC ATTGTGCAAT GTGTACATTA ATATGTACAA TTTTATGGTT
  ACGTATGACT CAAAGAACAA ACTGAATCAC AATAAGACTT CATCCGGCGG TGAGCTCATC
  W
  GATCTTGCCA AAATCCTACA GGGGCTGAAG TTTGTGTGCA AATTTCTCCT TACTGATTCT
  GTTCTCTTCC CCATTTCTCC CTCCCCTCTC TTCTCCACCA CTTCCACCTG TGACTTCCCC
  TTTTGCTTTG TCAACAACGT AGCTTTTAGA GCTTTCAACG TCACTGATGC ACACAGTGAC
  TGAGAGGAGG CAGCCCCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365959516	MGP_WTSI_5_98462111	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248507076					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365959516	MGP_WTSI_5_98462111	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:98180951 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16083	CpG island 16083	1532 bp distal
Gm42759	predicted gene 42759	1455 bp downstream
Rr615103	regulatory region 615103	1559 bp distal
Rr615104	regulatory region 615104	within coordinates
Tssr47435	transcription start site region 47435	1982 bp downstream
Tssr47436	transcription start site region 47436	1803 bp downstream
Tssr47437	transcription start site region 47437	1782 bp downstream
Tssr47438	transcription start site region 47438	208 bp upstream
Tssr51995	transcription start site region 51995	1838 bp upstream
Tssr51996	transcription start site region 51996	1776 bp upstream
Tssr51997	transcription start site region 51997	1745 bp upstream
Tssr51998	transcription start site region 51998	1704 bp upstream
Tssr51999	transcription start site region 51999	1671 bp upstream
Tssr52000	transcription start site region 52000	1643 bp upstream
Tssr52001	transcription start site region 52001	1629 bp upstream
Tssr52002	transcription start site region 52002	1605 bp upstream
Tssr52003	transcription start site region 52003	1569 bp upstream
Tssr52004	transcription start site region 52004	1978 bp downstream