rs248507297 SNP Detail

Summary

• ID
  rs248507297
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr8:27719209 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGATCTGTG CGCCACTATT
  CCCAACTCTA AGACTCTTTT TGTGAAGCCA CCAACCAGAG GTGGCTGGCA TCCTTTTCTC
  TCCCAGCTGA TGAGATCCGT CCCCTTCCCT TTCCTCAATT TCGCTCACCC TCTGTCCCTG
  TCTGCTGTTT CAGTTCTTCT TCTTTTCAGT TACTGGAGAC ACCCGCTTGT TTCAGGAGTC
  R
  CTCTAGTTTG ACATGGCATC GTGTAGCTTG GGATGCTGAG GGCTTCTGGT TTCCATCTTC
  CTCCTGCACT GCCCAGTCCA CACACCTTTC TCCTAGAAAA TTTCTAGAAA AGTCCCTTCA
  AATTCTGAAG TGATAGACAC ATTAAAATGA GAGGATGGAG TTTTGGAGAG GGAGGGGTGT
  ATCTCGGTGG TAGAGTGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss374045417	MGP_WTSI_8_28339653	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248507297					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss374045417	MGP_WTSI_8_28339653	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:27719209 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adrb3	adrenergic receptor, beta 3			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi20219	CpG island 20219			668 bp distal
Gm45470	predicted gene 45470			1640 bp upstream
Rr661483	regulatory region 661483			1806 bp distal
Rr661484	regulatory region 661484			1562 bp distal
Rr661485	regulatory region 661485			485 bp distal
Tssr80792	transcription start site region 80792			1637 bp upstream
Tssr80793	transcription start site region 80793			1140 bp upstream
Tssr80794	transcription start site region 80794			952 bp upstream
Tssr80795	transcription start site region 80795			662 bp upstream
Tssr80796	transcription start site region 80796			625 bp upstream
Tssr80797	transcription start site region 80797			594 bp upstream
Tssr80798	transcription start site region 80798			1624 bp downstream