rs248533994 SNP Detail

Summary

• ID
  rs248533994
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90623423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAATCATAAT CATTTTTCCT
  AAAACGATCA AGACTGATAA CCATTTGACA AGAGCCATAC AGACAAGCAC CAGCTGGCAC
  TCTTAGGTCT TCACGTATGG TCATCAGTTT GGGTTCCATT TGTAGATAAG AAACTGAACA
  TATAAAGGTC TAGGTTAATG CAATTTACAC AAAAGGAGAC CAAACCAGGG AGAGAAGGAA
  Y
  CAAAATTAAA AATTCAAACC AGAGCAAAGG AGTTAGCCCT GGTTTTGCTC TGACTTACAT
  GAACCACTAT GTGGAGTCCT CCATGTTAGC CTAGTCAAGC TTATCCTCTG GATGAAGTTG
  AAACCATATG AAGGAATATT TGGGGGGTGG GTCAAAACAG TTGTGTATCA ATGATTCCAT
  GTGGTTTGAC CCAATCATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss365836732	MGP_WTSI_5_90904590	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248533994					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss365836732	MGP_WTSI_5_90904590	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90623423 () rs orientation: forward

Symbol	Name	Function Class
Alb	albumin	within coordinates
Rr123615	regulatory region 123615	681 bp distal
Rr123616	regulatory region 123616	within coordinates
Tssr47120	transcription start site region 47120	882 bp downstream
Tssr47121	transcription start site region 47121	252 bp downstream
Tssr47122	transcription start site region 47122	902 bp upstream
Tssr51773	transcription start site region 51773	919 bp upstream
Tssr51774	transcription start site region 51774	859 bp upstream
Tssr51775	transcription start site region 51775	228 bp upstream
Tssr51776	transcription start site region 51776	922 bp downstream
Tssr51777	transcription start site region 51777	950 bp downstream
Tssr51778	transcription start site region 51778	963 bp downstream
Tssr51779	transcription start site region 51779	1022 bp downstream