rs248538049 SNP Detail

Summary

• ID
  rs248538049
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6951140 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGGTAGAG ACTCTGCCTT
  AGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGGT GGTGGTGGTG
  GTGGTGGTGG TTGTCATACA GCCCGGGCTC AAAATCCCAG CTCCCCCTTT ATATAGCCCT
  GTGACTTAAC TATGTGCTCT CACAACTGAA GTGTCCACGA GTTTTCCCGT TTAATGTTCC
  Y
  CACAGCCTTC AGAGGAAGTC CATCGGTCCC CCCCCCCCCA CCCACCACCT CTTTTCGGTC
  GTTTGTTCAA CCAATAGGAT GGAGAGTCCT TTGCCTGAGT CTGAGAGTTT TTCGAGCTAG
  AATTCGGTAT GGACCTAATA GTGTCCTAAT GCCTGTAGGT TTGACAAGGA GCACGCTGAC
  CCAAGCTAAG GTATCAGCAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401683885	MGP_WTSI_19_7048262	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248538049					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401683885	MGP_WTSI_19_7048262	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6951140 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10537	CpG island 10537	450 bp proximal
Plcb3	phospholipase C, beta 3	within coordinates
Ppp1r14b	protein phosphatase 1, regulatory inhibitor subunit 14B	1276 bp upstream
Rr543521	regulatory region 543521	1802 bp distal
Rr543522	regulatory region 543522	706 bp proximal
Rr543523	regulatory region 543523	1416 bp proximal
Tssr154704	transcription start site region 154704	841 bp upstream
Tssr154705	transcription start site region 154705	1179 bp upstream
Tssr154706	transcription start site region 154706	1276 bp upstream
Tssr154707	transcription start site region 154707	1304 bp upstream
Tssr154708	transcription start site region 154708	1339 bp upstream
Tssr154709	transcription start site region 154709	1350 bp upstream
Tssr154710	transcription start site region 154710	1366 bp upstream
Tssr154711	transcription start site region 154711	1440 bp upstream