rs248540462 SNP Detail

Summary

• ID
  rs248540462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19426940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATGCTTGT ATAATTATGA
  TGCTGTAATT ATATTCACAT GGATTTGTGG TTCTTGGGAG GGAACACATA GCTGTAGAAG
  ATATACTGCT GCTGAAATGA TTTTCACTGT TTATTTATGA TACAGTATGT TTTACTCAGA
  CAGTGTTAAC AGTCAGATAA AGTGAACTGT TGATAGAATT GTTGAAAATG TTTACTACAC
  Y
  ATAAGTTGCT TCTGTTACTA GAAAATCCAC ATTTGTTACA TTCTGCTGAA AAAGTGTTTT
  TTCACAAGTT AGGTGGTGTA CTGGCTAGTT TTGTGTCAAC TTGACACAGG CTGGAGTTAT
  CACAGAGAAA GGAGCTTCAG TTGGGGAAAT GCCTCCACAA GATCCAGCTG CAAGGCATTT
  TCTCAATTAG TGATCAAGGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320678653	CHEV_3_19272776	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248540462					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19426940 () rs orientation: forward

Symbol	Name	Function Class
Gm42188	predicted gene, 42188	1403 bp upstream