rs248541626 SNP Detail

Summary

• ID
  rs248541626
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:8970822 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACCACCT CTTCATATAT
  ACTATATTTT CATTAATAAA ATTCTAGCAT TGTCTACTGG CTTAAATTAT GGTAAAGGCA
  TGGATTTTGT CCTGACATCT CTTCCCTTCC TCTTTCCAAA ATACTTTTGA GGTTCTTTGA
  AATTATTCAG TGTTTATTTG ATTATGCCTA TTATCCACAG CTGCACACTA TGGTACAGTT
  W
  CATTCCTTCT CAAGGTAGCT ACAAGCCTTG TTTGTTTGTT TGTTTGTTTT TGAGACAGGG
  TTTCTCTGCA TAGCCCAGGC TGGCCTTGAA CTCAGAAATC CACCTGCCTC TGCCTCCCAA
  GTGCTGGGAT TAAAGGCGTG CGCCACCACA GCCCGGCTGA TAGCCACAAA TCTTAAAACA
  AATACAAAAT AAATTCAGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385082879	MGP_WTSI_12_8927628	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248541626					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385082879	MGP_WTSI_12_8927628	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:8970822 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4400	CpG island 4400	576 bp proximal
Gm60663	predicted gene, 60663	within coordinates
Laptm4a	lysosomal-associated protein transmembrane 4A	1250 bp upstream
Rr403227	regulatory region 403227	983 bp upstream
Rr462715	regulatory region 462715	286 bp proximal
Rr462716	regulatory region 462716	787 bp proximal
Rr462717	regulatory region 462717	924 bp proximal
Rr462718	regulatory region 462718	1027 bp proximal
Rr462719	regulatory region 462719	1781 bp proximal
Tssr112751	transcription start site region 112751	776 bp upstream
Tssr112752	transcription start site region 112752	865 bp upstream
Tssr112753	transcription start site region 112753	885 bp upstream
Tssr112754	transcription start site region 112754	1195 bp upstream
Tssr112755	transcription start site region 112755	1220 bp upstream
Tssr112756	transcription start site region 112756	1239 bp upstream
Tssr115725	transcription start site region 115725	1022 bp downstream