rs248543062 SNP Detail

Summary

• ID
  rs248543062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:106397056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAGCAGT CGGCGCTCTT
  AACCACTGAG CCATCTCATA GCCCCCACTT TGTTGTTTTT TAAATTTTGA ACAGGATCTC
  TCCAGGCTGT CCTGGAACTC AGTATGCAGA ACAATCTGGC CTGCCTTTGT CTCAAGTATC
  AGGATTAAAG GAATTCACCC CTACTCCTAG CTTCCATAAA ATTTCAAGAC AGCCATCCTT
  Y
  AAATATTGGA TCAAGTGACT GGGGTGGGGC AGGATGGTTC AGTGGTAGAG TGCTTGCTTA
  GCAAGTGCCA GGCCCTGAGT TTGATTCCCA TCACAAGTAA AACAAAACAA AATCTGATCA
  AAATCTGAAC GAAACAGCTC ATACCAGGCC CGGGATACCA GGCCCGGGAT ACCGCTACTG
  TCCCTGGTGG CAGAATGTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323839356	CHEV_11_106367544	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248543062					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:106397056 () rs orientation: forward

Symbol	Name	Function Class
Rr231251	regulatory region 231251	within coordinates
Rr238695	regulatory region 238695	345 bp proximal
Rr242844	regulatory region 242844	140 bp proximal
Rr248128	regulatory region 248128	1145 bp proximal
Tex2	testis expressed gene 2	within coordinates
Tssr111356	transcription start site region 111356	838 bp downstream