rs248544206 SNP Detail

Summary

• ID
  rs248544206
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102526912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAATAAG CCATAAGGCT
  TGGTGGTAGG GGAACTAAAA ATGTTCCCCC AAAGCTCCTT AGATGGAGAG AAACCACGGA
  AGAACCGCAC ATCCACGGGA AACGAGCAAA CATGGCTGGA GCAAGCCGTT GCACGCCTTT
  AACTGATCCG CGGCGCTGAA GGCGGAGAGA CCAGAAGAGG AGTGGCCACA AAGATTGCAA
  K
  TCTGACATCT TATTGGACCT TTAGGTCTAA CTATATTATA AAAAAATTAA AATGAATAAA
  GATGGAGGTA CGTAAGCTCA GTGACATGAC GCGTGAATTT CATTATTTTG CGCGATAATG
  AAGGATTATC CTATTTTACA GCTAAAAACG TTTATGTAGA ACTTCCACAT AAACATTAAA
  TAATGTACAT TAGGTCACAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss404206084	MGP_WTSI_X_100678645	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs248544206					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T	T	T	T	G	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404206084	MGP_WTSI_X_100678645	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102526912 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22887	CpG island 22887	1059 bp distal
Gm26992	predicted gene, 26992	1601 bp downstream
Rr693003	regulatory region 693003	866 bp distal
Rr693004	regulatory region 693004	1555 bp distal
Rr693005	regulatory region 693005	63 bp distal
Rr693006	regulatory region 693006	within coordinates
Rr693007	regulatory region 693007	836 bp proximal
Rr693008	regulatory region 693008	922 bp proximal
Tsix	X (inactive)-specific transcript, opposite strand	within coordinates
Tssr161724	transcription start site region 161724	604 bp downstream
Tssr163954	transcription start site region 163954	729 bp upstream
Tssr163955	transcription start site region 163955	512 bp upstream
Tssr163956	transcription start site region 163956	457 bp upstream
Tssr163957	transcription start site region 163957	264 bp upstream
Tssr163958	transcription start site region 163958	81 bp upstream
Tssr163959	transcription start site region 163959	54 bp upstream
Xist	inactive X specific transcripts	73 bp upstream