rs248548200 SNP Detail

Summary

• ID
  rs248548200
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:99773833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCTCTCC CGGCCTTCCA
  AGAGGACCCA CACTTCTTCC TGTAGGTGGC AACAGTGACA CCTGTTTGAC CAGTGAGGCT
  GAGCCAGGGA CTGCAAGAGG GAGGAGGCAG ACAACTCGGA GAGGAGCTGG GAGGCAGAGC
  TGCGGGCTTG CTTGCTCACT GTGTAAAAGG TGTGAGGGCT CGGGAAGGCT GGGGGCTACC
  K
  CTGGGGAGCC GGGAAGCAAA GAGCGGCTCA AGCCGGGAGG GATGGAGCCC AGGGGGCTAT
  GCAGCACCCC TGTCAGATTC CCTGCTCCGG GTCTTTCAGA CTGGCCAGAT CCTGATTCCA
  TCTTCCAGGC AACTCTTGAG GGAGGTAGGA CTCTGGAAAT CTGGGGTGCC CGGGTATGAC
  CCTAGACGAA GCAAGGGATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404170226	MGP_WTSI_X_97925566	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248548200					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404170226	MGP_WTSI_X_97925566	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:99773833 () rs orientation: forward

Symbol	Name	Function Class
Gdpd2	glycerophosphodiester phosphodiesterase domain containing 2	within coordinates
Gm52438	predicted gene, 52438	1066 bp upstream
Rr692772	regulatory region 692772	31 bp distal
Rr692773	regulatory region 692773	128 bp distal
Rr692774	regulatory region 692774	within coordinates
Tssr161618	transcription start site region 161618	404 bp downstream
Tssr161619	transcription start site region 161619	381 bp downstream
Tssr161620	transcription start site region 161620	264 bp downstream
Tssr161621	transcription start site region 161621	233 bp downstream
Tssr161622	transcription start site region 161622	105 bp downstream
Tssr161623	transcription start site region 161623	86 bp downstream
Tssr161624	transcription start site region 161624	60 bp downstream
Tssr161625	transcription start site region 161625	38 bp downstream