rs248550008 SNP Detail

Summary

• ID
  rs248550008
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:156135093 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGTGGCC CTTCTGAGGG
  GTCAGTTCTG GGGGAGACAG ACACGGCTCT AGGCAAAGAG CTCCTTCTAA GGGGTCCCAG
  CCCTCCCCAG AACTTGAGTT GCCCACATGG ACCAGTCCCG CCCCACAAGA CACGCCTTTG
  TTGGCTGAGA CACTTGGGTT TGGAGAGTGT GGCCTTGGCA GAGGGCTGAA CTCAGCCAAG
  Y
  TGCCCAGTCC TCTCTCCTGT TTATCTACTT CCGGAAAGAG TCAAAAATGA GGCACAGGAG
  GGCAAGGACT CAGCCTCAGT CCTAGTCAGG ACCCTCAGCT TGTAACCACC TAGTCTCTCT
  TACCTGCTCT CAAGGTCTTA GGAACCCTCT GCTGGGATAC AACAGTGGTG ACCTGGCAAC
  TGTCTCCAGG CAACTGTTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321444920	CHEV_4_155424745	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248550008					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:156135093 () rs orientation: forward

Symbol	Name	Function Class
Rr93557	regulatory region 93557	within coordinates
Rr97568	regulatory region 97568	1121 bp proximal
Rr106662	regulatory region 106662	373 bp distal
Tssr45000	transcription start site region 45000	163 bp upstream
Tssr45001	transcription start site region 45001	130 bp upstream
Tssr45002	transcription start site region 45002	97 bp downstream
Tssr45003	transcription start site region 45003	126 bp downstream
Tssr45004	transcription start site region 45004	149 bp downstream
Ttll10	tubulin tyrosine ligase-like family, member 10	within coordinates