rs248554034 SNP Detail

Summary

• ID
  rs248554034
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:26492112 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTTTCAC TGAATCATCA
  CTCAGAGAGT GCACTAGTGA TCAAAGTATT GCATTGTGAT GATTCGTCTT GGTGTCAGCT
  GGGCCTCACT TAAGCGTCAC CTAGGAGACA CACCTCTGAG TGTCCTATAG AAGTCTAAAG
  GAGTCCCTTC TTGCTGACTC ACTGAATACA TGCATCTCTC CGTGGTGCTT CCAGCAGGGG
  Y
  TGAAGTGGGG GAAGTGCCCG GGAGAAGATG GCATTCAGCA GAATTGGACG GCCACCATTG
  CCAATCAGCA GAGCTTCATG ACCACCACTG AGTCTTCTAA AATATTCAGT TCAGATCCGG
  TGCTGGAAAC CTGCCCTTCT GTGTGAACTA CTGCTGCAAA GGTGACTATA TATCGGGCTT
  TACTTGACAA TTGTAAGCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385360780	MGP_WTSI_12_27126978	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248554034					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385360780	MGP_WTSI_12_27126978	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:26492112 () rs orientation: forward

Symbol	Name	Function Class
D12Mit219	DNA segment, Chr 12, Massachusetts Institute of Technology 219	1000 bp distal
Rsad2	radical S-adenosyl methionine domain containing 2	633 bp downstream
Tssr112998	transcription start site region 112998	1628 bp upstream
Tssr112999	transcription start site region 112999	1675 bp upstream
Tssr113000	transcription start site region 113000	1799 bp upstream
Tssr115902	transcription start site region 115902	744 bp downstream
Tssr115903	transcription start site region 115903	1076 bp downstream
Tssr115904	transcription start site region 115904	1093 bp downstream
Tssr115905	transcription start site region 115905	1398 bp downstream
Tssr115906	transcription start site region 115906	1526 bp downstream
Tssr115907	transcription start site region 115907	1581 bp downstream
Tssr115908	transcription start site region 115908	1621 bp downstream
Tssr115909	transcription start site region 115909	1707 bp downstream
Tssr115910	transcription start site region 115910	1759 bp downstream
Tssr115911	transcription start site region 115911	1809 bp downstream
Tssr115912	transcription start site region 115912	1823 bp downstream
Tssr115913	transcription start site region 115913	1858 bp downstream
Tssr115914	transcription start site region 115914	1910 bp downstream
Tssr115915	transcription start site region 115915	1939 bp downstream
Tssr115916	transcription start site region 115916	1996 bp downstream