rs248559824 SNP Detail

Summary

• ID
  rs248559824
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:142132795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGCGTGCGT ATACCATTGC
  TCTTAGCTTC TGTTGAAAGT TATGCAGCTG AAATCCACAG AGTCAGCATC CACAAATCAG
  GGCACCAGAG AGTAGAGCAG CTCTAGATGG AAGTGACCGG AGCTCCAGAT GGGAGGAGGA
  CTCAAGGGCT GACCAGTCAT GACCACTCAG CAGTGGTTCT CACCTATGTG AGGTGCAATA
  K
  CACCTTGGCA GATCCTCAGC CTAGTGGCTG CATGTCAGCT GAGTACTCAT TTCTGGCTCC
  TAGTGATCCT TCATTTTTAC TCTGTGAAAA GCCCTGGTCA TTGCTGTGGG TGGACCCTAA
  GTTATGATAC TGACGGACAC CTCCAATTTG GTCATAAATA GACCCCAGCC TCTATTATCT
  TGGCGCTGTA ATGTGTGTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373453193	MGP_WTSI_7_149764963	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs248559824					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	T	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373453193	MGP_WTSI_7_149764963	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:142132795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19965	CpG island 19965	1254 bp proximal
Gm56421	predicted gene, 56421	1140 bp downstream
H19	H19, imprinted maternally expressed transcript	912 bp upstream
Mir675	microRNA 675	1911 bp upstream
Rr27	regulatory region 27	1090 bp proximal
Rr370601	regulatory region 370601	1190 bp upstream
Rr658231	regulatory region 658231	423 bp distal
Rr658232	regulatory region 658232	201 bp proximal
Rr658233	regulatory region 658233	812 bp proximal
Rr658234	regulatory region 658234	1152 bp proximal
Rr658235	regulatory region 658235	1248 bp proximal
Tssr2460	transcription start site region 2460	1798 bp downstream
Tssr2461	transcription start site region 2461	1132 bp downstream
Tssr70218	transcription start site region 70218	1651 bp downstream
Tssr70219	transcription start site region 70219	1613 bp downstream
Tssr70220	transcription start site region 70220	1501 bp downstream
Tssr70221	transcription start site region 70221	1462 bp downstream
Tssr70222	transcription start site region 70222	1404 bp downstream
Tssr70223	transcription start site region 70223	1262 bp downstream
Tssr70224	transcription start site region 70224	1217 bp downstream
Tssr70225	transcription start site region 70225	1179 bp downstream
Tssr70226	transcription start site region 70226	1084 bp downstream
Tssr70227	transcription start site region 70227	1002 bp downstream
Tssr70228	transcription start site region 70228	989 bp downstream
Tssr75829	transcription start site region 75829	1680 bp upstream
Tssr75830	transcription start site region 75830	1653 bp upstream
Tssr75831	transcription start site region 75831	1632 bp upstream
Tssr75832	transcription start site region 75832	1566 bp upstream
Tssr75833	transcription start site region 75833	1489 bp upstream
Tssr75834	transcription start site region 75834	1215 bp upstream
Tssr75835	transcription start site region 75835	1183 bp upstream
Tssr75836	transcription start site region 75836	1161 bp upstream
Tssr75837	transcription start site region 75837	1138 bp upstream
Tssr75838	transcription start site region 75838	1068 bp upstream
Tssr75839	transcription start site region 75839	1046 bp upstream
Tssr75840	transcription start site region 75840	1017 bp upstream
Tssr75841	transcription start site region 75841	990 bp upstream
Tssr75842	transcription start site region 75842	973 bp upstream
Tssr75843	transcription start site region 75843	967 bp upstream
Tssr75844	transcription start site region 75844	937 bp upstream
Tssr75845	transcription start site region 75845	904 bp upstream