rs248576805 SNP Detail

Summary

• ID
  rs248576805
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:108704643 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGAAGGA AGCAACTATG
  CTGTAAAGAA GCTGTGTGGG AGGTGATGCA ATTTTATAAA AGTATTCTGC ATTATAAAGT
  ATGCCTTCCT GAACTTATTT AACTAGGTTA CAATAGAAGA AAAACTACCT TTTATGTTAC
  TCTATGTTTC ACACAGGAAG GGCCCTTGTT CAAGGAGAGC GCTGAGCAGC ATTCTAACCA
  Y
  TGGTCTATAG CATCCCAGCG AACCACCACA GTGGCTTCCC CTTACAGGCT TACCTCACAG
  CTCCAGAGCC ATTCCACACT GCTGGGCACC GGGAACAATA CGGCCACTCT TTGGAATCTA
  ATCTATTATC AATGGCATCC TAGGGAAGAA AATTATTAAC ACCATCAAGA AAATTTCAGG
  GATTTGTTTT ATACACAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320866902	CHEV_3_108600245	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248576805					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108704643 () rs orientation: forward

Symbol	Name	Function Class
Gm66359	predicted gene, 66359	123 bp downstream
Rr583317	regulatory region 583317	1376 bp distal
Rr583318	regulatory region 583318	679 bp distal
Rr583319	regulatory region 583319	1243 bp proximal
Stxbp3	syntaxin binding protein 3	Intron
Tssr35171	transcription start site region 35171	724 bp downstream