rs248581401 SNP Detail

Summary

• ID
  rs248581401
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164175594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACGG GGTGAGGGGT TAGAAGCTAC
  G
  CATACCTATT CCCTGGGGGC ATTGT                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320605474	CHEV_2_164159410	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs248581401					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164175594 () rs orientation: forward

Symbol	Name	Function Class
Svs5	seminal vesicle secretory protein 5	within coordinates
Tssr744	transcription start site region 744	340 bp downstream
Tssr745	transcription start site region 745	297 bp downstream
Tssr746	transcription start site region 746	290 bp downstream
Tssr747	transcription start site region 747	277 bp upstream
Tssr748	transcription start site region 748	252 bp downstream
Tssr749	transcription start site region 749	215 bp downstream
Tssr750	transcription start site region 750	198 bp downstream
Tssr751	transcription start site region 751	146 bp downstream
Tssr752	transcription start site region 752	84 bp downstream
Tssr753	transcription start site region 753	74 bp downstream
Tssr754	transcription start site region 754	590 bp upstream
Tssr21562	transcription start site region 21562	938 bp downstream
Tssr21563	transcription start site region 21563	929 bp downstream
Tssr21564	transcription start site region 21564	898 bp downstream
Tssr21565	transcription start site region 21565	885 bp downstream
Tssr21566	transcription start site region 21566	874 bp downstream
Tssr21567	transcription start site region 21567	862 bp downstream
Tssr21568	transcription start site region 21568	853 bp downstream
Tssr21569	transcription start site region 21569	348 bp downstream
Tssr21570	transcription start site region 21570	306 bp downstream
Tssr21571	transcription start site region 21571	278 bp downstream
Tssr21572	transcription start site region 21572	264 bp downstream
Tssr21573	transcription start site region 21573	233 bp downstream
Tssr21574	transcription start site region 21574	171 bp downstream
Tssr21575	transcription start site region 21575	602 bp upstream
Tssr21576	transcription start site region 21576	618 bp upstream
Tssr21577	transcription start site region 21577	637 bp upstream
Tssr27433	transcription start site region 27433	318 bp upstream
Tssr27434	transcription start site region 27434	288 bp upstream
Tssr27435	transcription start site region 27435	263 bp upstream
Tssr27436	transcription start site region 27436	246 bp upstream
Tssr27437	transcription start site region 27437	205 bp upstream
Tssr27438	transcription start site region 27438	188 bp upstream
Tssr27439	transcription start site region 27439	183 bp upstream
Tssr27440	transcription start site region 27440	167 bp upstream
Tssr27441	transcription start site region 27441	118 bp upstream
Tssr27442	transcription start site region 27442	108 bp upstream
Tssr27443	transcription start site region 27443	49 bp upstream
Tssr27444	transcription start site region 27444	38 bp upstream
Tssr27445	transcription start site region 27445	575 bp downstream
Tssr27446	transcription start site region 27446	619 bp downstream
Tssr27447	transcription start site region 27447	714 bp downstream
Tssr27448	transcription start site region 27448	1328 bp downstream